| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,724,282 – 3,724,375 |
| Length | 93 |
| Max. P | 0.761861 |
| Location | 3,724,282 – 3,724,375 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 84.33 |
| Mean single sequence MFE | -24.01 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3724282 93 - 23771897 AUGCAAUUGCCGCCUGCGAGGAGGGAUAUAUUCCGAUCCUUCGUCUUGGGUCCACCUUCUACCUUCAUACCUCCCUUCCUCGCUCCCUUCCAU ..((....)).....(((((((((((..(((...(((((........)))))..............)))..)))).))))))).......... ( -23.33) >DroSec_CAF1 119197 82 - 1 AUGCAAUUGCCGCCUGUGAGGAGGGAUAUAUUCCGAUCCUUCGGCUUGGGUCCAA--GCUACCAUCAUACCUACCUCCC---------UCCAU ..((....)).........(((((((.......(((....)))(((((....)))--))................))))---------))).. ( -23.60) >DroSim_CAF1 115135 82 - 1 AUGCAAUUGCCGCCUGCGAGGAGGGAUAUAUUCCGAUCCUUCGGCUUGGGUCCAA--GCUACCUCCAGCCCUACCUCCC---------UCCAU ......((((.....))))(((((((.......(((....)))(((((....)))--))................))))---------))).. ( -25.10) >consensus AUGCAAUUGCCGCCUGCGAGGAGGGAUAUAUUCCGAUCCUUCGGCUUGGGUCCAA__GCUACCUUCAUACCUACCUCCC_________UCCAU ..(((.........)))(((((((((.....)))(((((........)))))..................)).))))................ (-15.74 = -15.30 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:56 2006