| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,706,507 – 3,706,625 |
| Length | 118 |
| Max. P | 0.571268 |
| Location | 3,706,507 – 3,706,625 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.01 |
| Mean single sequence MFE | -50.57 |
| Consensus MFE | -31.67 |
| Energy contribution | -32.15 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.571268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3706507 118 + 23771897 CCGAUCUCCGACAGCGGAAUCGGCGGCUCCGGCAGUUCGCUGAGCAUUACGCCCGGCGGUAGUUUGCCACCCGGAUACGGGGGCGGAGUGCUGCCCGGCGGACCACCCACCAUUUUUC-- (((((.((((....)))))))))..((((.(((.....)))))))....((((.(((((((.((((((.((((....)))))))))).))))))).))))..................-- ( -58.90) >DroVir_CAF1 125212 118 + 1 CCAAUUUCCGAUACCGGUAUCGGCGGCUCUGGCAGUUCGCUGAGCAUCACGCCCGGCGGCAGCUUGCCGCCAGCAUAUGGCGGUGGUGUGCUGCCCGGCGGUCCACCCACCAUUUUGC-- .......((((((....))))))..((((.(((.....)))))))....((((.(((((((..(..((((((.....))))))..)..))))))).))))..................-- ( -53.20) >DroPse_CAF1 133394 120 + 1 CCGAUCUCCGACAGCGGUAUCGGCGGCUCUGGCAGUUCGCUGAGCAUCACCCCCGGUGGCAGCUUGCCGCCCGCAUACGGCGGCGGUGUACUGCCCGGCGGACCGCCUACCAUCUUGCCA (((((..(((....))).))))).(((...(((.((((((((.(((.((((.((((((((.....)))))).((.....)))).))))...))).)))))))).))).........))). ( -56.60) >DroGri_CAF1 84065 118 + 1 CCAAUUUCCGAUACCGGAAUCGGUGGCUCCGGUAGCUCGCUGAGCAUAACGCCCGCCGGCAGUUUACCCCCUGCAUAGGGCGGUGGUGUACUACCAGGCGGUCCACCCAUCAUUUUGC-- .....(((((....)))))..((((((((((((((..(((((.......(((((....((((........))))...))))).)))))..))))).)).)).)))))...........-- ( -44.00) >DroWil_CAF1 138855 118 + 1 CCAAUCUCUGAUACGGGUAUUGGUGGCUCUGGUAGCUCGCUAAGCAUAACGCCUGGUGGCAAUUUACCUCCGCCAUAUGGUGGUGGUGUACUGCCCGGUGGACCGGCAACCAUUUUAC-- ((((((((......))).)))))(((..(((((.(((.....)))....((((.((..(.....((((.(((((....))))).))))..)..)).)))).)))))...)))......-- ( -42.70) >DroAna_CAF1 101887 118 + 1 CCGAUCUCUGAGAGCGGUAUUGGUGGCUCUGGCAGCUCGCUGAGUAUCACGCCCGGUGGCAGCUUCCCUCCGGGAUAUGGAGGCGGAGUACUGCCCGGCGGACCACCCACCAUUUUUC-- (((.((.....)).)))...((((((...((((((....)))....((.((((.((..(..(((((((((((.....)))))).))))).)..)).))))))))).))))))......-- ( -48.00) >consensus CCAAUCUCCGAUACCGGUAUCGGCGGCUCUGGCAGCUCGCUGAGCAUCACGCCCGGCGGCAGCUUGCCGCCCGCAUAUGGCGGCGGUGUACUGCCCGGCGGACCACCCACCAUUUUGC__ ...............(((...((((((((.(((.....)))))))....((((.(((((....(((((.(((.....))).)))))....))))).))))...)))).)))......... (-31.67 = -32.15 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:45 2006