Locus 1271

Sequence ID 3L_DroMel_CAF1
Location 3,671,826 – 3,671,922
Length 96
Max. P 0.979566
window1987

overview

Window 7

Location 3,671,826 – 3,671,922
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 89.34
Mean single sequence MFE -28.14
Consensus MFE -23.22
Energy contribution -23.88
Covariance contribution 0.66
Combinations/Pair 1.04
Mean z-score -2.17
Structure conservation index 0.83
SVM decision value 1.84
SVM RNA-class probability 0.979566
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3671826 96 + 23771897
U----UUGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU
.----.....................(..(((((.((((......((((((.((((((.......)))))).)))))))))).)).)))..)........ ( -29.30)
>DroSec_CAF1 66927 96 + 1
U----UCGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGCCUGCAUUGUUGU
.----.....................(..((((((.((((.(((.((((((.((((((.......)))))).)))))).)))..)))).))))..))..) ( -31.50)
>DroSim_CAF1 61697 96 + 1
U----UCGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU
.----.....................(..(((((.((((......((((((.((((((.......)))))).)))))))))).)).)))..)........ ( -29.30)
>DroEre_CAF1 61312 95 + 1
-----UCGAUUUUUCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGUUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU
-----.....................(..(((((.((((......((((((.((((((.......)))))).)))))))))).)).)))..)........ ( -27.80)
>DroYak_CAF1 47777 87 + 1
UUCAUUCGAUUUUUCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCCGCUUGC-------------UAGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU
..................((((.((((((((.((........)).)))))))).-------------)))).((((((.....))))))........... ( -22.80)
>consensus
U____UCGAUUUUCCUUUACUAUUAAGUGGCUGCAAGUAGAGGUUGCUGGCUGCCAGUUGAUGUUGCUGGUUGCUAGUUGCUAGCUGGCUGCAUUGUUGU
..........................(..((((((..(((.(((.((((((.((((((.......)))))).)))))).)))..)))..))))..))..) (-23.22 = -23.88 +   0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:31 2006