Locus 1263

Sequence ID 3L_DroMel_CAF1
Location 3,659,088 – 3,659,200
Length 112
Max. P 0.957523
window1975

overview

Window 5

Location 3,659,088 – 3,659,200
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 90.54
Mean single sequence MFE -32.96
Consensus MFE -25.30
Energy contribution -24.58
Covariance contribution -0.72
Combinations/Pair 1.20
Mean z-score -2.45
Structure conservation index 0.77
SVM decision value 1.48
SVM RNA-class probability 0.957523
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3659088 112 - 23771897
AACUUGAUUCGGGCAUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAAGUCAAUUAGAUCUGAUCUGAUGCAGAGGAACAAAAUCCCCACGUCUUGGGAUGUAACU
.((((((.(((.(.((((((((((((.....)))))))))))).).))).))))))...(((.((((.(...((((..(.(((......))))..)))).).)))).))).. ( -34.30)
>DroSec_CAF1 54181 112 - 1
AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUGGGAUCUGUGAUUUAAGUCAAUUAUAUCUGAUCUGAUGCAGAGUAAAAAAAUCACACCGUCUUGGGUUGUAACU
((((..(..(((...(..((((((((.....))))))))..)..((((((((...(((........)))((((...))))......)))))))))))..)..))))...... ( -32.70)
>DroSim_CAF1 49027 111 - 1
AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUG-GAUCUUUGAUUUAAGUCAAUUAGAUCUGAUCUGAUGCCGAGUAAAAAAUUCACACCGUCUUGGGAUGUAACC
..((..(..(((((....((((((((.....))))))))-((((...(((((((.....))))))).))))....)))((((.....))))....))..)..))........ ( -31.40)
>DroEre_CAF1 48391 112 - 1
AACUUGAUUCGGACUUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAGGUCUAUUAGAUCUAAUCUGAUGCAGAGUAAAAAAUGCACUCCAUUUUGGGAUGUAUCA
.((((...(((((..(((((((((((.....)))))))))))........(((((((.....))))))))))))....)))).....(((((..((.....))..))))).. ( -34.40)
>DroYak_CAF1 34530 112 - 1
AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAAGUCUAUUAGAUCUGAUCUGAUGCAGAGUAAAAAAUGCACACCGUCUUGGGAUGUAGCA
.((((((.(((.(..(((((((((((.....)))))))))))..).))).)))))).((((((((...))))))))............((((((((......)).))).))) ( -32.00)
>consensus
AACUUGAUUCGGGCUUUUCGGCUUGAUCUAUUCGAGCUGGAAUCUGUGAUUUAAGUCAAUUAGAUCUGAUCUGAUGCAGAGUAAAAAAUUCACACCGUCUUGGGAUGUAACA
.((((((.(((.(..(((((((((((.....)))))))))))..).))).))))))...(((.((((.(...((((....((.........))..)))).).)))).))).. (-25.30 = -24.58 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:20 2006