Locus 1257

Sequence ID 3L_DroMel_CAF1
Location 3,632,219 – 3,632,327
Length 108
Max. P 0.886590
window1969

overview

Window 9

Location 3,632,219 – 3,632,327
Length 108
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 95.20
Mean single sequence MFE -31.34
Consensus MFE -26.94
Energy contribution -26.98
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.58
Structure conservation index 0.86
SVM decision value 0.94
SVM RNA-class probability 0.886590
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3632219 108 - 23771897
ACCGGCAGCGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGUGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAAACACAAUG
...((((((...(((((.((((((-((......))))).......((((....))))......))).))))).....))))))........(((........))).... ( -32.40)
>DroSec_CAF1 21826 108 - 1
ACCGGCAGUGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGAACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCUCGAAACACAAUG
...((((((...(((((.((((((-((......)))))..(((.((((....))))...))).))).))))).....))))))........(((........))).... ( -32.80)
>DroSim_CAF1 22245 108 - 1
ACCGGCAGCGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAAACACAAUG
...((((((...(((((.((((((-((......)))))......((((....)))).......))).))))).....))))))........(((........))).... ( -34.30)
>DroEre_CAF1 21579 108 - 1
ACCAGCGGCGUUAUUAGUGCCCCU-UUCCCAAAAAAGGAUUUCCCGGGGAUCUCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAACAACGUGCCACGAAACACAAUG
....(((((...(((((.((((((-((......))))).......(.((....)).)......))).))))).....))))).........(((........))).... ( -26.70)
>DroYak_CAF1 6959 109 - 1
ACCGGCGGCGUUAUUAGUGCCCCUUUUCCCAAAAAAGGAUUUCCCGGGCAUCCCCGCACGUUCGGGUCUAAUUGAAAGCUGCCCAAGCAACGUGCCUCGAAACACAAUG
...((((((...((((((((((....(((.......)))......)))))..((((......)))).))))).....))))))........(((........))).... ( -30.50)
>consensus
ACCGGCAGCGUUAUUAGUGCCCCU_UUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAAACACAAUG
...((((((...(((((.(((.....(((.......))).....((((....)))).......))).))))).....))))))........(((........))).... (-26.94 = -26.98 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:14 2006