Locus 1255

Sequence ID 3L_DroMel_CAF1
Location 3,619,725 – 3,619,818
Length 93
Max. P 0.967101
window1967

overview

Window 7

Location 3,619,725 – 3,619,818
Length 93
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 86.04
Mean single sequence MFE -25.86
Consensus MFE -17.99
Energy contribution -18.24
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -3.00
Structure conservation index 0.70
SVM decision value 1.61
SVM RNA-class probability 0.967101
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3619725 93 - 23771897
CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAUAUAAAGCCCAAAAGCCGAACGACAAACCACAAAACAAGCCACGUUGAUUGCCCGCUU
.(((((((((((..(((((((-----------....)).)))))........((......)).....)))...........(((......)))...)))))))) ( -24.10)
>DroPse_CAF1 24872 93 - 1
CAGGUGGGCGUCAAUUGGAGCAGCAGCCGAGCAGCUGCAUCCAAAA--UAAGACCCCAA---------ACAAAUGGCAAAACAAGCCGAAAUGAUUGCCCGCUU
.((((((((((((.((((((((((.((...)).))))).)))))..--...........---------.....((((.......))))...))).))))))))) ( -35.40)
>DroSec_CAF1 9771 93 - 1
CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACGUUGAUUGCCCGCUU
.(((((((((((..(((((((-----------....)).)))))................(.....))))...((((............))))...)))))))) ( -23.70)
>DroSim_CAF1 9290 93 - 1
CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACGUUGAUUGCCCGCUU
.(((((((((((..(((((((-----------....)).)))))................(.....))))...((((............))))...)))))))) ( -23.70)
>DroEre_CAF1 9173 93 - 1
CAGGUGGGCGUCAAUUGGAGC-----------AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACAUUGAUUGCCCGCUU
.(((((((((((..(((((((-----------....)).)))))................(.....))))...........(((......)))...)))))))) ( -22.40)
>consensus
CAGGUGGGCGUCAAUUGGAGC___________AGCUGCAUCCAAAAAAUAAAACCCAAAAGCCGAACGACAAACAACAAAACAAGCCACGUUGAUUGCCCGCUU
.((((((((((((((((((((.((......)).)))..........................(....).................))).))))).))))))))) (-17.99 = -18.24 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:12 2006