Locus 1250

Sequence ID 3L_DroMel_CAF1
Location 3,583,680 – 3,583,784
Length 104
Max. P 0.872796
window1959

overview

Window 9

Location 3,583,680 – 3,583,784
Length 104
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.73
Mean single sequence MFE -36.45
Consensus MFE -21.63
Energy contribution -21.35
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.93
Structure conservation index 0.59
SVM decision value 0.88
SVM RNA-class probability 0.872796
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3583680 104 + 23771897
CAAAUUGCUGGGCACGCCCACCGAGGACACGUGGCCGGGAGUCACCCACUUUCCCGGCUACAAGCCACACAAGCUGGGUAAGUAAU--UGGCCU--CAGGGCCAGAGA-
..((((((((((....)))(((........(((((((((((.........))))))))))).(((.......))).))).))))))--)((((.--...)))).....- ( -42.80)
>DroVir_CAF1 145535 106 + 1
CAAAUUGCUGGGCACGCCCACCGAGGAUACGUGGCAGGGCGUCACACAUUUCCCAGGCUACAAACCGCACAAGUUGGGUGAGUAAU--UGGCCA-GCAGCAUCAGCAGA
....(((((((((((((((.(((.(....).)))..))))))..............((........))....(((((.(((....)--)).)))-)).)).))))))). ( -34.10)
>DroPse_CAF1 153894 91 + 1
CAAAUUGCUGGGCACCCCCACCGAGGAGACGUGGACGGGGGUAACCCAUUUCCCGGGUUACAAGCCCCACAAGCUGGGUAAGUAAU--CGACC----------------
((..(((..((((.((((..(((.(....).)))..))))(((((((.......)))))))..))))..)))..))..........--.....---------------- ( -34.50)
>DroGri_CAF1 133993 100 + 1
CAAAUUGCUCGGCACGCCCACCGAGGAUACGUGGCCGGGCUGCACACAUUUCCCUGGCUACAAACCACACAAGUUGGGUGAGUAAUUUUGUCCAGUCAGC---------
.......(((((........)))))(((..(((((((((.............))))))))).............((((..((....))..)))))))...--------- ( -29.32)
>DroMoj_CAF1 176518 106 + 1
CAAAUUGCUUGGCACGCCCACCGAGGACACGUGGCAGGGCGUCACACAUUUUCCCGGCUAUAAACCACACAAGCUGGGUAAGUAAU--UGGCCAGGCAGCAUCCUCAC-
....(((((((((((((((.(((.(....).)))..)))))).....((((.(((((((............))))))).))))...--..))))))))).........- ( -39.50)
>DroPer_CAF1 135010 91 + 1
CAAAUUGCUGGGCACCCCCGCCGAGGAGACGUGGACGGGGGUAACCCAUUUCCCGGGUUACAAGCCCCACAAGCUGGGUAAGUAAU--CGACC----------------
((..(((..((((..((((((((.(....).))).)))))(((((((.......)))))))..))))..)))..))..........--.....---------------- ( -38.50)
>consensus
CAAAUUGCUGGGCACGCCCACCGAGGACACGUGGCCGGGCGUCACACAUUUCCCCGGCUACAAACCACACAAGCUGGGUAAGUAAU__UGGCCA__CAGC_________
....(((((.(((((((((.(((.(....).)))..)))))).............((.......))......))).)))))............................ (-21.63 = -21.35 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:05 2006