| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 406,383 – 406,502 |
| Length | 119 |
| Max. P | 0.596033 |
| Location | 406,383 – 406,502 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.50 |
| Mean single sequence MFE | -35.45 |
| Consensus MFE | -22.50 |
| Energy contribution | -22.70 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 406383 119 + 23771897 AGGUUCCUGAGCAUGGCAAAGACGGUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC .......(((((.((((...(((((....)))))....)))-).)))))..(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -39.30) >DroSim_CAF1 55457 119 + 1 AGGUUCCUGAGCAUGGCAAAGGCGGUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC .......(((((.((((...(((((....)))))....)))-).)))))..(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -38.70) >DroEre_CAF1 57746 119 + 1 AGGUUCCCGGGCAGGGCGAAGACGAUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC ........((((..(((...((((((.....)))))).)))-..))))...(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -38.20) >DroWil_CAF1 68131 100 + 1 --------------------GUCGGUCGCCUGCCGUUGGCCUGGGCUCAAAGUGCCAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGACUGCAGGUCC --------------------...((..((((((.((((..((((((.......)))..((((......((((.(((((...)))))))))......)))))))....)))).)))))))) ( -32.40) >DroYak_CAF1 57684 119 + 1 AGGUUCCCGAGCAUGGCGCUGACGAUGUCCUGUCGUUAGCC-AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC ........((((...(.(((((((((.....))))))))))-..))))...(((((..((((......((((.(((((...)))))))))......))))((((.....)))).))))). ( -39.90) >DroAna_CAF1 47469 96 + 1 -----------------GAUGGCGA-----CGCCGUUACCC-GGGCUCAAAGUGCCAUCCCA-GACAAUGCAACAUAACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGUUAC -----------------(((.(((.-----.(((((((.(.-((((.......)))...(((-.....((((.(((.......)))))))......))).).).)))))))))).))).. ( -24.20) >consensus AGGUUCC_GAGCAUGGCGAAGACGAUGUCCUGUCGUUAGCC_AGGCUCAAACAGCUAUUCCAGGACAAUGCAACAUUACAAUAAUGUGCACUUUUAUGGACAGUUAACGGCUGCAGCUGC ...............................(((((((((...(((.......)))..((((......((((.(((((...)))))))))......))))..)))))))))......... (-22.50 = -22.70 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:07 2006