Locus 1229

Sequence ID 3L_DroMel_CAF1
Location 3,483,628 – 3,483,728
Length 100
Max. P 0.788703
window1930

overview

Window 0

Location 3,483,628 – 3,483,728
Length 100
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -35.06
Consensus MFE -22.52
Energy contribution -22.36
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.06
Structure conservation index 0.64
SVM decision value 0.58
SVM RNA-class probability 0.788703
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3483628 100 + 23771897
GUCUAUCUGCCAGCUGGUCCAUUCGCCCACUUGGUGGUGCAGUCAACCCGCAGUGGGUGGUGCUGCACUCC---------ACCCACCGAGACCCUGCACCACUGCUCCA--
...........(((.(((......))).....((((((((((....(.((..((((((((.(.....).))---------)))))))).)...)))))))))))))...-- ( -36.20)
>DroSec_CAF1 14229 90 + 1
GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGUGCUGCACUCC---------ACCCACUGUGCCUC--------UGUAC----
..........(((..((..((.(((((.....))))))).........((((((((((((.(.....).))---------)))))))))))).)--------))...---- ( -33.10)
>DroSim_CAF1 14642 98 + 1
GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGUGCUGCACUCC---------ACCCACUGUGCCCCUGCACCACUGUAC----
........(((((.(((.(.....).))).)))))((((((.......((((((((((((.(.....).))---------))))))))))....)))))).......---- ( -39.90)
>DroEre_CAF1 29938 99 + 1
GUCUAUC---CAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGCGCUGCACUCC---------GCCCACUGAAGCCCUCCACCCCUCCACCCAG
.......---...((((..((.(((((.....)))))))...........((((((((((.(.....).))---------))))))))...................)))) ( -30.00)
>DroYak_CAF1 15148 111 + 1
GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAGUCAACCCGCAGUGGGUGGUGCUGCACUCCACCCGCUCCACCCACUGUACCCCUCCACCUCCCCCCCCUG
........(((((.(((.(.....).))).)))))((((.((.......(((((((((((.((............)).)))))))))))....)).))))........... ( -36.10)
>consensus
GUCUAUCUGCCAGCUGGUCCAUCCGCCCACUUGGUGGUGCAAUCAACCCGCAGUGGGUGGUGCUGCACUCC_________ACCCACUGUGCCCCUCCACCACUGCACC___
............((.(((....(((((((((..((((.(.......)))))))))))))).)))))............................................. (-22.52 = -22.36 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:38 2006