| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,473,450 – 3,473,549 |
| Length | 99 |
| Max. P | 0.912584 |
| Location | 3,473,450 – 3,473,549 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 63.02 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -8.04 |
| Energy contribution | -9.57 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3473450 99 + 23771897 ---U--------UACUUUUAAACAGUGUAA-UU---ACCAAUUUUCUUGCGGUGCCCC-AAGCACUUCAGUUCUUUCCGCUU-UGCUGGGG-AUUUUCCCCUGUUGCAUGUCCCACU ---.--------...........((((...-..---..........(((.(((((...-..))))).)))........((..-.((.((((-.....)))).)).))......)))) ( -21.40) >DroSec_CAF1 4429 99 + 1 ---U--------UACUUUUAAACAGUGUAA-UC---ACCUAUUUUCCUGCAGUGCCCC-AAGUACUUCAAUUCUUUCCGCUU-UGCAGGGG-AUUUUCCCCUGUUGCAUGUCCCACU ---.--------...........((((...-..---...........((.(((((...-..))))).)).........((..-.(((((((-.....))))))).))......)))) ( -23.60) >DroSim_CAF1 4388 101 + 1 ---U--------UACUUUUAAACAUGGUAAAUC---CAUUUUUUUUCUGCAGGGCCCC-AACCCCUUCAAUUCUUUCCGCUU-UUCAGUGGAAUUUUCCCCNNNNNNNNNNNNNNNN ---.--------...........((((.....)---)))........((.((((....-...)))).)).....(((((((.-...)))))))........................ ( -14.60) >DroEre_CAF1 19814 105 + 1 ---CAAACUCAGUAGUUUCCAUCA--GUUA-AU---ACCCAUUUUCUUGCAGUGCUCC-ACGCGCCUCAAUCCUGUUCGCUU-UGCCGGGG-AUUUCCCCCUGUUGCAUGCCCCACU ---.(((((....)))))......--....-..---............(((((((...-..)))).............((..-.((.((((-.....)))).)).)).)))...... ( -18.10) >DroYak_CAF1 4222 99 + 1 ---UAACCUUA--AGUA-----UA--GCUG-AU---AGCCAUUUUCUUGCAGUGCCCC-ACGCACUUCAAACCUGUCCGCUUUUGCAGGGG-AUUUGCCCCUGUUGCAUGCCCCACU ---........--.(((-----.(--((.(-((---((........(((.(((((...-..))))).)))..))))).)))..))).((((-...(((.......)))..))))... ( -26.50) >DroAna_CAF1 16123 105 + 1 UGGU--------CACAUUUAAGUCUUCCAU-AUAACCUCACUUUUCUCUCAGUGCUUCGACGCACUUCAAUCCCUUCCGGAC-AGCAGUUC-AU-UCCCCCUGUUGCAUGCUCCAUU (((.--------.((......))...))).-...................(((((......)))))............((((-(((((...-..-.....)))))).....)))... ( -14.30) >consensus ___U________UACUUUUAAACA_UGUAA_AU___ACCAAUUUUCUUGCAGUGCCCC_AAGCACUUCAAUCCUUUCCGCUU_UGCAGGGG_AUUUUCCCCUGUUGCAUGCCCCACU ...............................................((.(((((......))))).)).........((....((.((((......)))).)).)).......... ( -8.04 = -9.57 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:36 2006