| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,463,055 – 3,463,217 |
| Length | 162 |
| Max. P | 0.938940 |
| Location | 3,463,055 – 3,463,164 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 89.28 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -26.16 |
| Energy contribution | -26.97 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3463055 109 - 23771897 AUGACGACCAUUUGCCGUAAAUUGAGGCAUUUUGCCCCAACACUCUUGUAAUUGUACCGCUGAAAGAUGGAAAGUCUUGUUGGGGGGGG-GGGGAGAGAAUGGUUGGGCU ....((((((((((((.........))).((((.((((.(((....))).......((.(..((((((.....))))).)..).)).))-)).))))))))))))).... ( -36.10) >DroSec_CAF1 10291 105 - 1 AUGACGGCCAUUUGCCGUAAAUUGAGGCAUUUUGCCCCAACGCUCUUGUAAUUGUACCGCUGAAAGAUGGAAAGUGACGAGGGGG-----AGGGGGGGAAUGGUUGGGCU ....((((((((((((.........)))......((((..(.(((((((.(((...(((.(....).)))..))).))))))).)-----..)))).))))))))).... ( -37.40) >DroSim_CAF1 10355 105 - 1 AUGACGGCCAUUUGCUGUAAAUUGAGGCAUUUUGCCCCAACGCUCUUGUAAUUGUACCGCUGAAAGAUGGAAAGUGACGAGGGGG-----AGGGGGGGAAUGGUUGGGCU ....((((((((((((.........)))......((((..(.(((((((.(((...(((.(....).)))..))).))))))).)-----..)))).))))))))).... ( -34.80) >DroYak_CAF1 10636 110 - 1 AUGACGGCCAUUUGCCGUAAAUUGAGGCAUUUUGCCCCAACACUCUUGUAAUUGUACCGCUGAAAGAUGGAAAGUGACGAUGGGGGAAAAAGGGGAAAAAUGGGUGGGUU ....((.(((((((((.........))).((((.((((.(((....))).(((((..((((...........))))))))))))).)))).......)))))).)).... ( -27.30) >consensus AUGACGGCCAUUUGCCGUAAAUUGAGGCAUUUUGCCCCAACACUCUUGUAAUUGUACCGCUGAAAGAUGGAAAGUGACGAGGGGG_____AGGGGGAGAAUGGUUGGGCU ....((((((((((((.........)))......((((..(.(((((((.(((...(((.(....).)))..))).))))))).)......))))..))))))))).... (-26.16 = -26.97 + 0.81)
| Location | 3,463,125 – 3,463,217 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 95.29 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -23.59 |
| Energy contribution | -23.40 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.938940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3463125 92 + 23771897 UGGGGCAAAAUGCCUCAAUUUACGGCAAAUGGUCGUCAUCGAUUUCCGCUUCGCGUUAUUCGAUAUGUAUUUCAAUACACUGCGAAAAUAGA ((((((.....))))))....(((((.....))))).(((((.(..(((...)))..).))))).(((((....)))))............. ( -22.50) >DroSec_CAF1 10357 92 + 1 UGGGGCAAAAUGCCUCAAUUUACGGCAAAUGGCCGUCAUCGAUUUCCGCUUCGCGUUAUUCGAUAUGUAUUUCAGUACACUGCAAAAAUAGU ((((((.....))))))....(((((.....))))).(((((.(..(((...)))..).))))).(((((....)))))............. ( -25.80) >DroSim_CAF1 10421 92 + 1 UGGGGCAAAAUGCCUCAAUUUACAGCAAAUGGCCGUCAUCGAUUUCCGCUUCGCGUUAUUCGAUAUGUAUUUCAGUACACUGCAAAAAUAGU ((((((.....)))))).......(((..........(((((.(..(((...)))..).))))).(((((....))))).)))......... ( -22.10) >DroYak_CAF1 10707 92 + 1 UGGGGCAAAAUGCCUCAAUUUACGGCAAAUGGCCGUCAUCGAUUUCCGCUUCGCGUUAUUCGAUAUGUAUUUUAAUACACUGCGAAAUUAUU ((((((.....))))))....(((((.....))))).(((((.(..(((...)))..).))))).(((((....)))))............. ( -25.20) >consensus UGGGGCAAAAUGCCUCAAUUUACGGCAAAUGGCCGUCAUCGAUUUCCGCUUCGCGUUAUUCGAUAUGUAUUUCAAUACACUGCAAAAAUAGU ((((((.....))))))....(((((.....))))).(((((.(..(((...)))..).))))).(((((....)))))............. (-23.59 = -23.40 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:23 2006