Locus 1211

Sequence ID 3L_DroMel_CAF1
Location 3,458,497 – 3,458,591
Length 94
Max. P 0.507251
window1904

overview

Window 4

Location 3,458,497 – 3,458,591
Length 94
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 81.78
Mean single sequence MFE -29.68
Consensus MFE -15.94
Energy contribution -17.86
Covariance contribution 1.92
Combinations/Pair 1.10
Mean z-score -1.96
Structure conservation index 0.54
SVM decision value -0.05
SVM RNA-class probability 0.507251
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3458497 94 - 23771897
ACGUAA-----CAACAAAUGGGGCUAAAAAGGUGGUACAAAGGAGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUACUUUUAUGUAUU
((((((-----(((((....(((((((....(((((.........)))))....)))))))...))))).(((......)))........))))))... ( -25.20)
>DroPse_CAF1 15458 90 - 1
ACGUAAUGCCCCAACUAUGGGGGUUAGAAA---------AGGGUGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGCAGCCACUUCUACAUACA
..(((...(((((....)))))..((((..---------..(((((((((((((.....))))))).(((.((.....)))))))))))))))..))). ( -30.00)
>DroSec_CAF1 6219 94 - 1
ACGUAA-----CAACAAAUGGGGCUAAAAAGGUGGUCCAAAGGGGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUAAUUUUAUGUAUU
((((((-----(((((....(((((((....(((((((.....)))))))....)))))))...))))).(((......)))........))))))... ( -31.60)
>DroSim_CAF1 6256 94 - 1
ACGUAA-----CAACAAAUGGGGCUAAAAAGGUGGUCCAAAGGGGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUACUUUUAUGUAUU
((((((-----(((((....(((((((....(((((((.....)))))))....)))))))...))))).(((......)))........))))))... ( -31.60)
>DroPer_CAF1 18291 90 - 1
ACGUAAUGCCCCAACUAUGGGGGUUAGAAA---------AGGGUGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGCAGCCACUUCUACAUACA
..(((...(((((....)))))..((((..---------..(((((((((((((.....))))))).(((.((.....)))))))))))))))..))). ( -30.00)
>consensus
ACGUAA_____CAACAAAUGGGGCUAAAAAGGUGGU_CAAAGGGGGCCGCAUAGUUGGCCUAUGUGUUGCACUUGACGGGGUAGCUACUUUUAUGUAUU
.(((.......(((((....(((((((....(((((.........)))))....)))))))...)))))......)))..................... (-15.94 = -17.86 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:14 2006