Locus 1202

Sequence ID 3L_DroMel_CAF1
Location 3,414,218 – 3,414,320
Length 102
Max. P 0.989235
window1891

overview

Window 1

Location 3,414,218 – 3,414,320
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 82.52
Mean single sequence MFE -35.77
Consensus MFE -22.21
Energy contribution -26.02
Covariance contribution 3.81
Combinations/Pair 1.03
Mean z-score -3.26
Structure conservation index 0.62
SVM decision value 2.16
SVM RNA-class probability 0.989235
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3414218 102 + 23771897
UGGGAGCUGGAACGGGUCACUCCCCCCGUAGAACGACCCUGCAUGCUUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA
.(((((.....(((((........))))).....((((.((.((((........))))))...))))((((((((............)))))))).))))). ( -33.10)
>DroSec_CAF1 29063 102 + 1
UGGGAGCGGGAAGGGGUCACUCCUCCCGUGGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA
.((((((((((.((((...))))))))))(((..((((.((.(((.(((......)))))))))))).(((((((............)))))))))))))). ( -40.40)
>DroSim_CAF1 17973 102 + 1
UGGGAGCGGGAAGGGGUCACUCCUCCCGUGGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA
.((((((((((.((((...))))))))))(((..((((.((.(((.(((......)))))))))))).(((((((............)))))))))))))). ( -40.40)
>DroYak_CAF1 28324 86 + 1
UGGCUGCUAUGGCGGCU------------A-UAAGUAUGUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCCUUCAUGGCU---CCCA
(((((((....))))))------------)-...((((((((........)))))))).....((..((((((((............))))))))---.)). ( -29.20)
>consensus
UGGGAGCGGGAACGGGUCACUCCUCCCGUAGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA
.((((((((((.(((....))).)))))......((((.((.((((........))))))...))))((((((((............)))))))).))))). (-22.21 = -26.02 +   3.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:02 2006