Locus 12

Sequence ID 3L_DroMel_CAF1
Location 44,211 – 44,315
Length 104
Max. P 0.543750
window15

overview

Window 5

Location 44,211 – 44,315
Length 104
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 92.00
Mean single sequence MFE -31.93
Consensus MFE -27.55
Energy contribution -28.00
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.80
Structure conservation index 0.86
SVM decision value 0.02
SVM RNA-class probability 0.543750
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 44211 104 + 23771897
--CCAUAAUAAACCAAUAAAAAAUUGCUGCUGCCGUCGCUGCAGCCACUUGCAGUUACAAUCAAGUGAUUUUUAUUAGAAG---CGAGUCUAGAGGGGCACUAUGGGGC
--(((((.......((((((((...(((((.((....)).)))))((((((..........)))))).)))))))).....---...((((....))))..)))))... ( -26.20)
>DroSec_CAF1 34334 107 + 1
CGCCAUAAUAAACCAAUAAAACGUUGCUGCUGCCGUAGCUGCAGACACUUGCAGUUACAAUUAAGUGAUUUUUAUUAGGAGCCGCGAGUCUA--GGGGCACUAUGGGGC
(.(((((.....(((((((((.((..((......((((((((((....)))))))))).....))..))))))))).)).(((.(.......--).)))..))))).). ( -34.80)
>DroSim_CAF1 36013 107 + 1
CGCCAUAAUAAACCAAUAAAACGUUGCUGCUGCCGUAGCUGCAGACACUUGCAGUUACAAUCAAGUGAUUUUUAUUAGGAGCCGCGAGUCUA--GGGGCACUAUGGGGC
(.(((((.....(((((((((.((..((......((((((((((....)))))))))).....))..))))))))).)).(((.(.......--).)))..))))).). ( -34.80)
>consensus
CGCCAUAAUAAACCAAUAAAACGUUGCUGCUGCCGUAGCUGCAGACACUUGCAGUUACAAUCAAGUGAUUUUUAUUAGGAGCCGCGAGUCUA__GGGGCACUAUGGGGC
..(((((.....(((((((((.((..((......((((((((((....)))))))))).....))..))))))))).))........((((....))))..)))))... (-27.55 = -28.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:51 2006