Locus 1197

Sequence ID 3L_DroMel_CAF1
Location 3,382,328 – 3,382,448
Length 120
Max. P 0.869488
window1882

overview

Window 2

Location 3,382,328 – 3,382,448
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.08
Mean single sequence MFE -25.98
Consensus MFE -21.66
Energy contribution -21.86
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.83
SVM decision value 0.86
SVM RNA-class probability 0.869488
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3382328 120 - 23771897
CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGUCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA
........(((((((....(((...((.((....)).))....)))....))).((((((..(((((((.....))((((((((....)))))))).....))))).))))))))))... ( -23.60)
>DroSec_CAF1 49827 120 - 1
CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA
........((((.(((...(((...((.((....)).))....)))....))).((((((..(((((((.....))((((((((....)))))))).....))))).))))))))))... ( -25.30)
>DroSim_CAF1 47981 120 - 1
CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA
........((((.(((...(((...((.((....)).))....)))....))).((((((..(((((((.....))((((((((....)))))))).....))))).))))))))))... ( -25.30)
>DroEre_CAF1 48841 119 - 1
C-CUGCCCCGCAACUCUUUGGGUUUUCCAUUCGUAUCGAUAUCGCUGUUCGGGCGAAUUGCUUUGAAGAUUCUCCCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA
.-....((((........))))...........(((((.....((((.(((((.(((((........))))).)))((((((((....))))))))........)).))))....))))) ( -30.20)
>DroYak_CAF1 48743 119 - 1
C-UCGCCCCGCAACCCUUCAGUUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCGCUUCUGCGAUA
.-((((...((....((((((.....(.((((((.((((.........)))))))))).)..))))))........((((((((....))))))))............))....)))).. ( -25.50)
>consensus
CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA
........((((.................((((...((((.(((((.....)))))))))...))))((((.....((((((((....))))))))........)))).....))))... (-21.66 = -21.86 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:54 2006