| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,380,422 – 3,380,531 |
| Length | 109 |
| Max. P | 0.920405 |
| Location | 3,380,422 – 3,380,531 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -17.25 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.47 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3380422 109 + 23771897 AAAGGAGAACCAAUUCCUACGGUUCCACUUAAAAUCAGCUUACAAAAUAUGAAAUAGCCAAAUGGCUGCUCAUUCCACUAAGCGAAUACAGCGAUAAUAUUGUUCUUCA .(((..(((((.........)))))..))).......(((((......((((..(((((....))))).)))).....)))))(((...((((((...)))))).))). ( -23.60) >DroSec_CAF1 47769 84 + 1 AAAGGAGAACCCAUUCUUAA-----------AAAUCAGCUUAUAGAAUAUGAAACAGCUAAAUGGCUGCUCAUU--------------CAGCGAUAAUAUUGUUCUUCA ...(((((((..((((((((-----------........))).)))))((((..(((((....))))).)))).--------------.............))))))). ( -16.60) >DroSim_CAF1 46029 85 + 1 AAAAGAGAACCCAUUCCUAA----------AAAAUCAGCUUAUAGAAUAUGAAACAGCUAAAUGGCUGCUCAUU--------------CAGCGAUAAUAUUGUUCUUCA ....((((((..........----------......((((...............))))..((.((((......--------------)))).))......)))))).. ( -11.56) >consensus AAAGGAGAACCCAUUCCUAA__________AAAAUCAGCUUAUAGAAUAUGAAACAGCUAAAUGGCUGCUCAUU______________CAGCGAUAAUAUUGUUCUUCA ...(((((((........................(((............)))..(((((....))))).................................))))))). (-12.57 = -12.47 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:42 2006