Locus 1181

Sequence ID 3L_DroMel_CAF1
Location 3,371,387 – 3,371,501
Length 114
Max. P 0.994766
window1846

overview

Window 6

Location 3,371,387 – 3,371,501
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.74
Mean single sequence MFE -21.85
Consensus MFE -19.48
Energy contribution -19.24
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -2.13
Structure conservation index 0.89
SVM decision value 2.51
SVM RNA-class probability 0.994766
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3371387 114 + 23771897
UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC------GCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU
...((((((....((((((.......(((((.....))))).......))))))..........(((((((.(((..------.....))).)))((....)))))).))))))...... ( -20.34)
>DroSec_CAF1 38509 114 + 1
UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCUCAACACUCGUACUC------GCAAUGCAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU
...(((((((((.......((((.(((((((((...((((...............................))))..------.))))))))).)))).....)))..))))))...... ( -24.58)
>DroSim_CAF1 36206 114 + 1
UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC------GCACUGCAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU
...(((((((((.......((((.((((((.((((((((((((....))))))....))))))........((....------))..)))))).)))).....)))..))))))...... ( -21.70)
>DroEre_CAF1 37977 114 + 1
UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC------GCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU
...((((((....((((((.......(((((.....))))).......))))))..........(((((((.(((..------.....))).)))((....)))))).))))))...... ( -20.34)
>DroYak_CAF1 37195 120 + 1
UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUCGCACUCGCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU
...(((((((((.......((((.((((((.((...((((((((.....(((.((....)).)))....))))....))))...)).)))))).)))).....)))..))))))...... ( -22.30)
>consensus
UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC______GCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU
...(((((((((.......((((.((((((..(((((((((((....))))))....)))))...((....))..............)))))).)))).....)))..))))))...... (-19.48 = -19.24 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:20 2006