Locus 1154

Sequence ID 3L_DroMel_CAF1
Location 3,341,497 – 3,341,606
Length 109
Max. P 0.833006
window1796

overview

Window 6

Location 3,341,497 – 3,341,606
Length 109
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 82.74
Mean single sequence MFE -33.87
Consensus MFE -26.99
Energy contribution -27.47
Covariance contribution 0.48
Combinations/Pair 1.19
Mean z-score -2.08
Structure conservation index 0.80
SVM decision value 0.72
SVM RNA-class probability 0.833006
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3341497 109 + 23771897
ACAUUUUUC-UUUUCAGGCCUCUUUGGAUGAAGUGGAGGCCAUUCUUAAGCGUCAUCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGACAAGAUCCUUAAAGGCUUCUCA
.........-.(((((..((.....)).))))).(((((((.((((((((.(((.....)))))))))))(((((....)))))((((.....))))....))))))).. ( -35.60)
>DroGri_CAF1 8926 109 + 1
AAUCCUUUG-CUUACAGUCCUCGCUGGAUGAGGUGGAGGCCAUACUUAAGCGUCAUCUGGACUUUGAGAAGAGCCUCAUGGCACAGGACAAGAUCCUCAAGGGCUUCUCG
..((((.((-(((((.((((.....))))...)))(((((..(.((((((.(((.....))))))))).)..)))))..)))).)))).(((.(((....)))))).... ( -33.40)
>DroEre_CAF1 7664 109 + 1
UUACUUCUC-UUUUUAGUCCUCUUUGGAUGAAGUGGAGGCCAUUCUUAAGCGACACCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGACAAGAUCCUUAAAGGCUUCUCA
.((((((..-......((((.....))))))))))((((((.((((((((...(....)...))))))))(((((....)))))((((.....))))....))))))... ( -33.40)
>DroWil_CAF1 7290 109 + 1
UUCU-UUUCUAUUAAAGUCCUCGCUUGAUGAGGUGGAAGCCAUUUUGAAGCGUCAUCUGGACUUUGAAAAGAGCCUGAUGGCUCAGGAUAAAAUUCUAAAAGGCUUCUCC
....-.............(((((.....))))).(((((((........(.((((((.((.((((....)))))).)))))).).(((......)))....))))))).. ( -31.70)
>DroYak_CAF1 7722 109 + 1
UCGUUUUCC-CAUUUAGUCUUCUUUGGAUGAAGUGGAGGCCAUUCUUAAGCGUCACCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGAUAAGAUCCUUAAAGGCUUUUCA
........(-(((((.((((.....)))).))))))(((((.((((((((.(((.....)))))))))))(((((....)))))(((((...)))))....))))).... ( -36.00)
>DroMoj_CAF1 6607 109 + 1
GUUCGUUUG-CUUACAGUCCUCACUGGAUGAGGUGGAAGCCAUACUCAAGCGUCAUCUGGACUUUGAGAAGAGCCUAAUGGCACAGGACAAGAUACUGAAGGGCUUCUCU
........(-(((...((((.....)))).))))(((((((...((((((.(((.....)))))))))....(((....))).(((.........)))...))))))).. ( -33.10)
>consensus
UUACUUUUC_CUUACAGUCCUCUCUGGAUGAAGUGGAGGCCAUUCUUAAGCGUCAUCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGACAAGAUCCUUAAAGGCUUCUCA
..................((((.......)))).(((((((.((((((((.(((.....)))))))))))(((((....)))))((((.....))))....))))))).. (-26.99 = -27.47 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:31 2006