Locus 1149

Sequence ID 3L_DroMel_CAF1
Location 3,328,038 – 3,328,146
Length 108
Max. P 0.819525
window1786

overview

Window 6

Location 3,328,038 – 3,328,146
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -24.28
Consensus MFE -23.58
Energy contribution -23.42
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.97
SVM decision value 0.68
SVM RNA-class probability 0.819525
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3328038 108 - 23771897
GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA
((((.(((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... ( -23.70)
>DroSec_CAF1 15957 108 - 1
GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA
((((.(((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... ( -23.70)
>DroSim_CAF1 8719 108 - 1
GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAACUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA
((((.(((.....(((.((((((.((((.((((((.....))).))).((.(((........))).))...)))).)))))).))).....))))))).......... ( -25.70)
>DroEre_CAF1 16301 108 - 1
GACAUGGUUUAAAAUAUAAUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUCUAA
(((.((((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... ( -23.70)
>DroYak_CAF1 11267 108 - 1
GACUUGGUUUUAAAUAUAGUGUUAUAUAAGCGAGCUCAAGGUUACUCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUGUAA
((((.(((.....(((.((((((.((((((((.(((..((....)).))).)))).(((((.....))))))))).)))))).))).....))))))).......... ( -24.60)
>consensus
GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA
(((.((((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... (-23.58 = -23.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:21 2006