Locus 1144

Sequence ID 3L_DroMel_CAF1
Location 3,322,089 – 3,322,207
Length 118
Max. P 0.596494
window1777

overview

Window 7

Location 3,322,089 – 3,322,207
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.89
Mean single sequence MFE -35.88
Consensus MFE -26.92
Energy contribution -27.48
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -1.73
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.596494
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3322089 118 - 23771897
UCACGCUUAACGGUGCUGCAGCAUGCCUAAUGAGCGAGCGAGCAGGCAACCAGCCAGAGCGAGACAGCCUCUAAACGAGCGGAAUGCGGUUUAAAAAUAAACCAAGCC-CAGAGCGAGA
...(((((...((.((((((((.((((....).))).))..((.(((.....)))(((((......).))))......))....)))((((((....)))))).))))-).)))))... ( -35.60)
>DroSec_CAF1 10028 118 - 1
UCACGCUUAACGGUGCUGCAGCAUGCCUAAUGAGCGAGCAAGCAGGCAACCAGUCAGAGCGAGAAAGCCUCUGAACGAGCGGAAUGCGGUUUAAAAAUAAACCAAGCC-CAAAGCGAGA
...(((((...((.(((...((((.((......((......))..((......(((((((......).))))))....)))).))))((((((....)))))).))))-).)))))... ( -35.70)
>DroSim_CAF1 2377 118 - 1
UCACGCUUAACGGUGCUGCAGCAUGCCUAAUGAGCGAGCGAGCAGGCAACCAGUCAGAGCGAGAAAGCCUCUGAACGAGCGGAAUGCGGUUUAAAAAUAAACCAAGCC-CAGAGCGAGA
...(((((...(((.((((.((.((((....).))).))..))))(((.((.((((((((......).))))).))....))..)))((((((....))))))..)))-..)))))... ( -36.50)
>DroEre_CAF1 10151 119 - 1
UCACGCUUAACGGUGCAGCAGCAUGGCUAAUGAGCGAGCGAGAAGGCAACAAGCCAGAGCGAGACAGCCUCUGAGCAAGCGGAAUGCGGUUUAAAAAUAAACCAAGCCCCAAAGCGAGA
...(((((...((.((....((((.(((....)))..((.....(....)..((((((((......).))))).))..))...))))((((((....))))))..))))..)))))... ( -36.50)
>DroYak_CAF1 5160 118 - 1
UCACGCCUAACGGUGCUGCAGCAUGGCUAAUGAACGAGCGAGAAGGCUGCAAGUCAGAGCGAGACCACCUCUGAAUGGGAGGAAUGCGGUUUAAAAAUAAACCAAGCC-CAAAGCGAGA
((..(((....)))((((((((.(.(((........))).)....)))))...((((((.(......))))))).((((.(.....)((((((....))))))...))-)).))))).. ( -35.10)
>consensus
UCACGCUUAACGGUGCUGCAGCAUGCCUAAUGAGCGAGCGAGCAGGCAACCAGUCAGAGCGAGACAGCCUCUGAACGAGCGGAAUGCGGUUUAAAAAUAAACCAAGCC_CAAAGCGAGA
...(((((...((((((....(((.....)))....)))..(((..(..(..(((((((.(......)))))).))..)..)..)))((((((....))))))..)))...)))))... (-26.92 = -27.48 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:13 2006