Locus 1123

Sequence ID 3L_DroMel_CAF1
Location 3,290,368 – 3,290,480
Length 112
Max. P 0.820307
window1745

overview

Window 5

Location 3,290,368 – 3,290,480
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.54
Mean single sequence MFE -36.64
Consensus MFE -32.98
Energy contribution -33.06
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.32
Structure conservation index 0.90
SVM decision value 0.68
SVM RNA-class probability 0.820307
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3290368 112 + 23771897
CAAACUGGCUUAGUAACCCACAUAAACACCACCGA--------AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA
.....((((((...................((((.--------...)).)).(((((..(((((..(((.((((((((.......)))))))))))..))))))))))..)))))).... ( -37.80)
>DroSec_CAF1 20092 120 + 1
CAAACUGGCUUAGUAACCCACAUAAACACCACCGAAUCCCCGAAUCCGAGUCUCAGUUGUCCGGGGGCUAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA
.....((((((.....................((......))........((.((((..(((((..((.(((((((((.......)))))))))))..))))))))))).)))))).... ( -35.50)
>DroSim_CAF1 20908 120 + 1
CAAACUGGCUUAGUAACCCACAUAAACACCACCGAAUCCCCGAAUCCAAGUCCCAGUUGACCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA
.....((((((.....................((......))..........((((((..((((..(((.((((((((.......)))))))))))..))))))))))..)))))).... ( -36.50)
>DroEre_CAF1 22174 112 + 1
CAAACUGGCUUAAUAACCCACAUAAACACCACCGA--------AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA
.....((((((...................((((.--------...)).)).(((((..(((((..(((.((((((((.......)))))))))))..))))))))))..)))))).... ( -37.80)
>DroYak_CAF1 22786 112 + 1
CAAACUGGCUUAGUAACCCACAUAAACACCACCGA--------AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCGGUGCAACUGGAGCUGGAGAGGGCAAUUA
....(..((((.((.....))........((((((--------(((((...((((((((((....))))))))))))))(......).)))))))......))))..)............ ( -35.60)
>consensus
CAAACUGGCUUAGUAACCCACAUAAACACCACCGA________AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA
.....((((((...............(......)..................(((((..(((((..((.(((((((((.......)))))))))))..))))))))))..)))))).... (-32.98 = -33.06 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:41 2006