Locus 1117

Sequence ID 3L_DroMel_CAF1
Location 3,276,516 – 3,276,608
Length 92
Max. P 0.600924
window1734

overview

Window 4

Location 3,276,516 – 3,276,608
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 87.78
Mean single sequence MFE -26.63
Consensus MFE -19.65
Energy contribution -20.52
Covariance contribution 0.87
Combinations/Pair 1.23
Mean z-score -3.01
Structure conservation index 0.74
SVM decision value 0.14
SVM RNA-class probability 0.600924
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3276516 92 + 23771897
UUACUGGCAAACAUUUCAUGCAAAUCGCAA-UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUGAUGA---UCGUGCUAAA
..............(((((((...(((...-.)))...((((((((((.....)))))))))))))))))((((((.......---.))))))... ( -27.20)
>DroSec_CAF1 6638 95 + 1
UUACUGGCAAAGAUUUCAUGCAAAUUGCAA-UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUGAUGAUAAUCGUGCUAAA
....(((((..((((((((.(((..(((..-(((.((.((((((((((.....)))))))))))).)))..)))..))))))).)))).))))).. ( -30.00)
>DroSim_CAF1 7279 95 + 1
UUACUGGCAAACAUUUCAUGCAAAUUGCAA-UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGCUGAUGAUAAUCGUGCUAAA
....(((((......(((((((...(((..-(((.((.((((((((((.....)))))))))))).)))..))))))..))))......))))).. ( -27.30)
>DroEre_CAF1 6582 93 + 1
UUACUGGCAAACAUUUCAUGCAAAUUGCAAUUCGAGGUACUUUGUUGCCAAGUGCAAUAAGGCGCAUGAAGGCACGUUAAUGA---UCGUGCUAAA
..............(((((((....(((........)))(((((((((.....))))))))).)))))))((((((.......---.))))))... ( -26.50)
>DroYak_CAF1 6894 93 + 1
UUACUGGCAAACAUUUCAUGCAAAUUGCACUUCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUAAUGA---UCGUGCUAAA
....(((((......((((......(((.(((((.((.((((((((((.....)))))))))))).)))))))).....))))---...))))).. ( -28.90)
>DroAna_CAF1 8393 89 + 1
UUCCUGGCAAACAUUUCAUGCAAAAUGCAU-UUCAUU---UUAGUUGCCAAGUGCACGAAAAUGCAUGAAGGCAUGCUAAUGA---UAAUGACUAA
....(((((....(((((((((...(((((-((((..---.....))..)))))))......)))))))))...)))))....---.......... ( -19.90)
>consensus
UUACUGGCAAACAUUUCAUGCAAAUUGCAA_UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUAAUGA___UCGUGCUAAA
..............(((((((...(((.....)))...((((((((((.....)))))))))))))))))((((((...........))))))... (-19.65 = -20.52 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:30 2006