Locus 1114

Sequence ID 3L_DroMel_CAF1
Location 3,264,511 – 3,264,615
Length 104
Max. P 0.627920
window1726

overview

Window 6

Location 3,264,511 – 3,264,615
Length 104
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 92.94
Mean single sequence MFE -30.20
Consensus MFE -23.68
Energy contribution -24.52
Covariance contribution 0.84
Combinations/Pair 1.09
Mean z-score -1.59
Structure conservation index 0.78
SVM decision value 0.19
SVM RNA-class probability 0.627920
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3264511 104 + 23771897
CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCAGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAAUCUUGGC--CAGCACA
.(((....((..(....)..))(((((((((.(((.(((((....))))).((((.(((....)))))))..(((.....))).))).)))))))))--..))).. ( -31.90)
>DroSec_CAF1 43156 106 + 1
CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCCGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAGUCUUGGCCCCAGCACA
.(((....((..(....)..))((((((((...((((((.....((((((.(((..........))).))))))(.....).))).)))))))))))....))).. ( -30.80)
>DroSim_CAF1 46110 104 + 1
CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCCGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAAUCUUGGC--CAGCACA
.(((....((..(....)..))((((((((...((((((.....((((((.(((..........))).))))))(.....).))).)))))))))))--..))).. ( -30.50)
>DroEre_CAF1 44476 103 + 1
CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACUAGAGUGGCCACAGAUCCAUCAGAGCUGUCACUGUAAGCCAGGCAUCAAUCUUGGC--CAGCAC-
.(((....((..(....)..))(((((((((.(((.(((((....))))).((((.((.....)).))))..(((.....))).))).)))))))))--..))).- ( -28.70)
>DroYak_CAF1 44822 103 + 1
CUGCCACCGAAGCCAUAGAAUC-CAGAGAUUUAUGAGCCACCAGAGUGGCCACAGAUCCAUCAGAGCUGUCACUCUAGGCCAGGCAUCAAUCUUGGC--CAGCACA
.(((.......((((((((.((-....)))))))).))....((((((...((((.((.....)).)))))))))).(((((((.......))))))--).))).. ( -29.10)
>consensus
CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCAGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAAUCUUGGC__CAGCACA
.(((....((..(....)..))(((((((((.(((.(((((....))))).((((.(((....)))))))..(((.....))).))).)))))))))....))).. (-23.68 = -24.52 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:23 2006