Locus 1112

Sequence ID 3L_DroMel_CAF1
Location 3,251,752 – 3,251,853
Length 101
Max. P 0.686517
window1723

overview

Window 3

Location 3,251,752 – 3,251,853
Length 101
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.14
Mean single sequence MFE -26.45
Consensus MFE -11.96
Energy contribution -12.02
Covariance contribution 0.06
Combinations/Pair 1.19
Mean z-score -2.03
Structure conservation index 0.45
SVM decision value 0.32
SVM RNA-class probability 0.686517
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3251752 101 + 23771897
UCACG-GAAUCCACCGCGCACCAUCAUCUGAAUUUGUACCUA------UCUAUCUAUGGGUAAACAACCCCCCAGAAUU---AUGGUUGCUGGUACCGCACGUAACCCGGA
..(((-......((((.(((((((..((((...(((((((((------(......))))))..)))).....))))...---)))).)))))))......)))........ ( -23.00)
>DroSec_CAF1 30546 101 + 1
UCACGGGAAUCCACCGC--CCCAUCAUCCACAUCUGUAUCCA--------UAUCUAUGGAUAAACAACCCCCCAGAAUGAUGAUGGUUGCUGGUACCAAACGUAACCCGGA
...((((.....(((((--.((((((((....((((((((((--------(....)))))))..........))))..))))))))..)).)))((.....))..)))).. ( -29.70)
>DroSim_CAF1 33427 98 + 1
UCACGGGAAUCCACCGC--CCCAUCAUCCACAUCUGUAUCCA--------UAUCUAUGGGUAAACAACCCCCCAGAAUG---AUGGUUGCUGGUACCGAACGUAACCCGGA
...((((.....(((((--.(((((((.....((((((((((--------(....)))))))..........)))))))---))))..)).)))((.....))..)))).. ( -25.40)
>DroEre_CAF1 31030 92 + 1
UCACGGGAAUCCACAG--CUACAUAAUCU------AUCUCCA--------UGUCUAUGGGUAAACAACCCCCCAGAAUA---UUCGUUGCUGGUACCGAACGUAACCCGGA
...((((......(((--(.((.......------.......--------.......((((.....))))....((...---.)))).)))).(((.....))).)))).. ( -18.50)
>DroYak_CAF1 31989 106 + 1
UCACGGGAAUCCACCAUGCCAUACCAUCUGG--UUAUAUCUAUGUAGAUAUAUCUAUGGGUAAACAACCCCAUAGAAUU---UCGGUUGCUGGUACCGCACGUAACCCGGA
...((((.....((((.((...(((......--.(((((((....)))))))((((((((........))))))))...---..))).))))))((.....))..)))).. ( -31.80)
>DroAna_CAF1 31812 86 + 1
UCACGGGAAUCCACCGG-------------GGUCUGUGUCCA--------U-UCUAUGGGUAAACAACCCCUCUGAAUG---CUGGUUGCUGGCACAGAACGUUACCCGGA
....((....)).((((-------------(.((((((((.(--------(-((...((((.....))))....))))(---(.....)).))))))))......))))). ( -30.30)
>consensus
UCACGGGAAUCCACCGC__CCCAUCAUCU_CAUCUGUAUCCA________UAUCUAUGGGUAAACAACCCCCCAGAAUG___AUGGUUGCUGGUACCGAACGUAACCCGGA
...((((...(((.......................((((((..............))))))..(((((...............))))).)))(((.....))).)))).. (-11.96 = -12.02 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:20 2006