Locus 111

Sequence ID 3L_DroMel_CAF1
Location 379,023 – 379,116
Length 93
Max. P 0.998659
window158

overview

Window 8

Location 379,023 – 379,116
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 95.05
Mean single sequence MFE -22.62
Consensus MFE -20.88
Energy contribution -21.08
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -2.07
Structure conservation index 0.92
SVM decision value 3.18
SVM RNA-class probability 0.998659
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 379023 93 - 23771897
GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCUAU
..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. ( -22.20)
>DroSec_CAF1 33137 93 - 1
GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCCAA
..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. ( -24.80)
>DroSim_CAF1 33872 93 - 1
GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCCAA
..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. ( -24.80)
>DroEre_CAF1 34506 93 - 1
GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAACAGAGGGGCAUCGAAAAACAAGCCUGCGUUCACAACAAUUUGUAGGUUCAAGCCAU
..((((.........))))(((((...)))))...........(((...(.....).((((((((............))))))))...))).. ( -23.10)
>DroYak_CAF1 34962 93 - 1
GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAAAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGCUUUGAACUAU
((((((.........))))(((((...)))))............)).........((((.(((((............))))).))))...... ( -18.20)
>consensus
GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCCAU
..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. (-20.88 = -21.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:44 2006