Locus 1108

Sequence ID 3L_DroMel_CAF1
Location 3,237,737 – 3,237,827
Length 90
Max. P 0.857114
window1714

overview

Window 4

Location 3,237,737 – 3,237,827
Length 90
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.29
Mean single sequence MFE -20.94
Consensus MFE -20.52
Energy contribution -20.56
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.20
Structure conservation index 0.98
SVM decision value 0.81
SVM RNA-class probability 0.857114
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3237737 90 + 23771897
CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACC-A
...(..(((((.((((..........((((((....))))))((.(((.(((.......))).))).))))))..)))))..)......-. ( -21.40)
>DroSec_CAF1 16726 91 + 1
CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUAUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACCAA
...(((((((...(((....)))...((((((....))))))..))))))).......(((.(((((..........))))).)))..... ( -19.90)
>DroSim_CAF1 17266 91 + 1
CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUAUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACCAA
...(((((((...(((....)))...((((((....))))))..))))))).......(((.(((((..........))))).)))..... ( -19.90)
>DroEre_CAF1 16871 83 + 1
CUUGUAAAUAGCUGGCACCUGCUGAAGUGGAACAAUUACCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGC--------
...((((((((.((((..........((((........))))((.(((.(((.......))).))).))))))..))))))))-------- ( -21.60)
>DroYak_CAF1 17165 91 + 1
CUUGUAAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUACCCGGCCAA
...((((((((.((((..........((((((....))))))((.(((.(((.......))).))).))))))..))))))))........ ( -21.90)
>consensus
CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACCAA
...((((((((.((((..........((((((....))))))((.(((.(((.......))).))).))))))..))))))))........ (-20.52 = -20.56 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:12 2006