| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,231,669 – 3,231,775 |
| Length | 106 |
| Max. P | 0.766652 |
| Location | 3,231,669 – 3,231,775 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.47 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -15.24 |
| Energy contribution | -15.13 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3231669 106 - 23771897 UUAAUCGAGUAAACUAUGUCACCAGACGAAAGGCUGAGGCAAAAACUCAAGCGUUGCACAGCUGCAAUUAAUCAGUUGAUUGAUUCUAUAUAUGUAUA------------CGCAUCGU ......((((......((((..(((.(....).))).))))...))))..((((((((.......((((((((....)))))))).......)))).)------------)))..... ( -23.94) >DroEre_CAF1 10880 99 - 1 UUAAACGAGUA-ACUAUGUCACCAAACACAAAGCUGGGGCAAAAACUUCAGCAUUGCACAGCUGCAAUUAAUCAGUUGAUUGGUUCUAUAUGUA----------------CCCAUU-- ......(.(((-..((((..(((((...(((.(((((((......))))))).)))..((((((........)))))).)))))..))))..))----------------).)...-- ( -24.50) >DroYak_CAF1 11155 117 - 1 UUAAACGAGUA-ACUAUGUCACCAAACAUCAAGCUGAGGCAAAAACUUCAGCAUUGCACAGCUGCAAUUAAUCAGUUGAUUGAUUCUAUAUAUAUAUGCUAUGCUAUGUGCCCAUCGU ....((((...-....................(((((((......)))))))...(((((...((((((((((....)))))))..((((....))))...)))..)))))...)))) ( -26.10) >consensus UUAAACGAGUA_ACUAUGUCACCAAACAAAAAGCUGAGGCAAAAACUUCAGCAUUGCACAGCUGCAAUUAAUCAGUUGAUUGAUUCUAUAUAUAUAU_____________CCCAUCGU ..................(((...(((.....(((((((......)))))))((((((....))))))......)))...)))................................... (-15.24 = -15.13 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:07 2006