Locus 1103

Sequence ID 3L_DroMel_CAF1
Location 3,229,694 – 3,229,790
Length 96
Max. P 0.554549
window1707

overview

Window 7

Location 3,229,694 – 3,229,790
Length 96
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 80.67
Mean single sequence MFE -14.92
Consensus MFE -7.76
Energy contribution -7.72
Covariance contribution -0.04
Combinations/Pair 1.29
Mean z-score -1.96
Structure conservation index 0.52
SVM decision value 0.04
SVM RNA-class probability 0.554549
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3229694 96 - 23771897
AACAACAG-C--GGCAAAGCCAAAAA--AAGAAAAACAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAAAAAACCU
........-.--(((...((((....--..........((((..((((....))))..)))).........(((.....))).)))).))).......... ( -16.40)
>DroSec_CAF1 8985 91 - 1
AACAACAG-C--GGCUAAGCCAAAAA------AAAGCAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAA-AAACGU
........-.--((((..((((....------..((((...((((.....))))....)))).........(((.....))).))))))))...-...... ( -18.90)
>DroSim_CAF1 9098 91 - 1
AACAACAG-C--GGCUAAGCCAAAAA------AAAGCAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAA-AAACCU
........-.--((((..((((....------..((((...((((.....))))....)))).........(((.....))).))))))))...-...... ( -18.90)
>DroYak_CAF1 9062 85 - 1
AACAACAAAC--AACAGAGCUU------------AGCA-GCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGUUGGCAGCCCAA-AAACCU
..........--....(.((((------------((((-..((((.....))))....)))))..(((((((.......))))))).))).)..-...... ( -13.10)
>DroAna_CAF1 9872 94 - 1
-ACACCAG-CUAAGCUAAGCCAAAAACCAAAAAAAAAAGAUACAGAAUUAUUGUUUAAUGCUAAUUUAACACACUUCAAAUGC-GGUAUCCAAA-AA-U--
-..(((.(-((......)))........................(((....((((.(((....))).))))...)))......-))).......-..-.-- (  -7.30)
>consensus
AACAACAG_C__GGCUAAGCCAAAAA______AAAGCAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAA_AAACCU
..................(((.................((((..((((....))))..)))).........(((.....)))..))).............. ( -7.76 =  -7.72 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:05 2006