Locus 1096

Sequence ID 3L_DroMel_CAF1
Location 3,203,086 – 3,203,206
Length 120
Max. P 0.677230
window1695

overview

Window 5

Location 3,203,086 – 3,203,206
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.50
Mean single sequence MFE -48.26
Consensus MFE -39.52
Energy contribution -39.08
Covariance contribution -0.44
Combinations/Pair 1.21
Mean z-score -1.55
Structure conservation index 0.82
SVM decision value 0.30
SVM RNA-class probability 0.677230
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3203086 120 - 23771897
CCACGCAUGAAACAGAGUGCCCAGGAUGGGGUACUUGGACAGUACCAGCAGACCGGCGCCCAUCACGCCGCUGUGAAAGUAGUGGCUAUGGGGCAGGACCGCCUCCGUGCCCUUUUGGAG
....((((........))))(((((((((((((((.....)))))).((......))..)))))..((((((((....))))))))...(((((((((.....))).)))))).)))).. ( -46.00)
>DroSec_CAF1 21965 120 - 1
CCACGCGUGAAACAGAGUGCCCAGGAUGGGGUACUUGGACAGCACCAGCAGACCGGCGCCCAUCACGCCGCUGUGAAAGUAGUGGCUAUGGGGCAGGACCGCCUCCGUGCCCUUCUGGAG
....(.(((.....((((((((......))))))))......))))..((((..(((((((((...((((((((....)))))))).))))((.(((....))))))))))..))))... ( -48.20)
>DroEre_CAF1 21234 120 - 1
CCACGCGUGGAACAAAGUGCCCAGUAUGGGGUACUUGGAGAGCACCAGCAGACCAGCGCCCAUCACGCCGCUAUGAAAGUAGUGGCUGUGGGGCAGGACCGCCUCCGUACCCUUCUGCAA
......(..(((..((((((((......))))))))((((.((.((.((......))((((..(((((((((((....)))))))).))))))).))...))))))......)))..).. ( -53.40)
>DroYak_CAF1 20364 120 - 1
CCACGCAUGAAACAAAGUGCCCAGUAUGGGGUACUUGGAGAGCACCAGCAGACCGGCGCCCAUUACGCCGCUAUGGAAAUAGUGGCUGUGGGGCAGGACCGCCUCCGUGCCCUUCUGCAG
....(((.......((((((((......))))))))((((.((((..((.(.((.((.(((((...((((((((....)))))))).))))))).)).).))....)))).))))))).. ( -53.20)
>DroAna_CAF1 21421 120 - 1
CCACGCAUGAAACAGGGUGCCCAGAAUGGGGUACUUUGAUAGCACAAGCAGCCCAGCUCCCAUUACUCCGCUGUGAAAGUAGUGAGCAUAGGGAAGAACUGCCUGUGUGGCCUUCUGGAG
(((((((.....((((((((((......)))))))))).........((((......((((....(((.(((((....))))))))....))))....)))).)))))))((....)).. ( -40.50)
>consensus
CCACGCAUGAAACAGAGUGCCCAGGAUGGGGUACUUGGACAGCACCAGCAGACCGGCGCCCAUCACGCCGCUGUGAAAGUAGUGGCUAUGGGGCAGGACCGCCUCCGUGCCCUUCUGGAG
....((((........))))((((...(((((((.(((......)))((.(.((.((.(((((...((((((((....)))))))).))))))).)).).))....))))))).)))).. (-39.52 = -39.08 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:54 2006