Locus 1085

Sequence ID 3L_DroMel_CAF1
Location 3,173,712 – 3,173,832
Length 120
Max. P 0.537549
window1681

overview

Window 1

Location 3,173,712 – 3,173,832
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.67
Mean single sequence MFE -42.30
Consensus MFE -30.27
Energy contribution -30.67
Covariance contribution 0.39
Combinations/Pair 1.28
Mean z-score -1.09
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.537549
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3173712 120 - 23771897
AGAUCACUGGCUGGUCCGUGCACACCAGGCCAUCCGUGCAGACGAAGGUUUGGUUGGUAUUCGGCUGAGUGGAGCCGAAGCACAAAUUGUAUGCGGUCUGGUUGAUGCAGGAGGCUCCAU
.......(((..(((((.(((((((((((((..(((..(((((....)))))..)))..(((((((......)))))))(((.........)))))))))).)).)))).).))))))). ( -47.10)
>DroPse_CAF1 12806 120 - 1
AAAUAAUUGGCUGAUCUGUGCAGACCAGGCCAUCCGUGCACGUGAAGUUCUGUGCGGUAUUGGGCAUGCUGCUGCCAAAGCAUAGGUUGUACGAGGUCUGAUUAAUGCAAGCGGCCCCAU
........(((((.....((((...((((((...(((((((.....))(((((((.......((((......))))...)))))))..))))).)))))).....))))..))))).... ( -39.40)
>DroEre_CAF1 10721 120 - 1
AGAUCACAGGCUCGUCCGUGCACACCAGGCCAUCCGUGCAGACAAAGGUCUGGUUGGUAUUCGGCUGAGAGCCGCCGAAGCACAAAUUGUAUGCGGUCUGGUUGAUGCAGGAGGCUCCAU
........((..(.(((.(((((((((((((..(((..(((((....)))))..)))..((((((........))))))(((.........)))))))))).)).))))))).)..)).. ( -45.60)
>DroYak_CAF1 11094 120 - 1
AGAUCACGGGCUGGUCCGUGCACACCAGGCCAUCUGUGCAGACAAAGGUCUGGUUGGUAUUCGGCUCAGUGCCGCCGAAGCACAAGUUGUAUGCGGUCUGGUUGAUGCAGGAGGCUCCAU
.......(((((..(((.(((((((((((((...(((((((((....))))........((((((........))))))))))).((.....))))))))).)).)))))))))).)).. ( -48.10)
>DroAna_CAF1 10256 120 - 1
AUAUCACGGGCUGAUCCGUACACACCAAUCCAUCCGUGCAGAUGAAGGUCUGAUUGGUGUCGGGUUGGGUUCUUCCGAAACACAAAUGAUAAGCGGUCUGGUUGAUGCAAGCAGCUCCAU
.((((((((((..(((((...(((((((((...((...(....)..))...))))))))))))))..).....)))).........)))))...((.(((.(((...))).)))..)).. ( -34.20)
>DroPer_CAF1 10129 120 - 1
AAAUAAUUGGCUGAUCUGUGCAGACCAGGCCAUCCGUGCACGUGAAGUUCUGUGCGGUAUUGGGCAUGCUGCUGCCAAAGCAUAGGUUGUACGAGGUCUGAUUAAUGCAAGCGGCCCCAU
........(((((.....((((...((((((...(((((((.....))(((((((.......((((......))))...)))))))..))))).)))))).....))))..))))).... ( -39.40)
>consensus
AGAUCACUGGCUGAUCCGUGCACACCAGGCCAUCCGUGCAGACGAAGGUCUGGUUGGUAUUCGGCUGAGUGCUGCCGAAGCACAAAUUGUAUGCGGUCUGGUUGAUGCAAGAGGCUCCAU
........((((...((.((((.((((((((..(((..(((((....)))))..))).....(((........)))..................))))))))...)))))).)))).... (-30.27 = -30.67 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006