Locus 1072

Sequence ID 3L_DroMel_CAF1
Location 3,143,109 – 3,143,222
Length 113
Max. P 0.791948
window1657

overview

Window 7

Location 3,143,109 – 3,143,222
Length 113
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 86.49
Mean single sequence MFE -18.10
Consensus MFE -12.34
Energy contribution -12.66
Covariance contribution 0.31
Combinations/Pair 1.18
Mean z-score -2.11
Structure conservation index 0.68
SVM decision value 0.59
SVM RNA-class probability 0.791948
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3143109 113 + 23771897
CAAAUUAAU-CUACUCGACAGCCCUACUUCGGUAUUUUGACAAUUUCGGUACAACACAAAUACCGCACAUACAUUAUUGUAUUUCGUGUACGUUAACACCGAAUUAUUCUUCAU
.........-.................((((((...(((((......((((.........))))(((((((((....)))))...))))..))))).))))))........... ( -18.40)
>DroSec_CAF1 7130 113 + 1
CAAAUUAAU-AUACCCGACAGCCCUAGUUCGGUAUUUUAACAAUUUCGGUACCACACAAAUACCGCACAUACAUUAUUUUAUAUCGUGUACGUUAACACCGAAUUAUUCUUUAU
.........-..............(((((((((...(((((.....(((((.........)))))....(((((.((.....)).))))).))))).)))))))))........ ( -18.60)
>DroSim_CAF1 7108 113 + 1
CAAAUUAAU-AUACUCGACAGCCCUACUUCGGUAUUUUAACAAUUUCGGUACCACACAAAUACCGCACAUACAUUAUUUUAUAUCGUGUACGUUAACACCGAAUUAUUCUUUAU
.........-.................((((((...(((((.....(((((.........)))))....(((((.((.....)).))))).))))).))))))........... ( -15.30)
>DroYak_CAF1 7174 109 + 1
CAAAUUAAUCAUACUCGACAACCCUCGUUUGGUUUUUUAACAAUUGGGGUAUAACAUAAAUACCGCAGACA--UAAUUUUAUUUCGUGUAUGAUAACAUUAAAUUAUUCUU---
.......(((((((.(((.((((.......)))).........(((.(((((.......))))).)))...--..........))).))))))).................--- ( -20.10)
>consensus
CAAAUUAAU_AUACUCGACAGCCCUACUUCGGUAUUUUAACAAUUUCGGUACAACACAAAUACCGCACAUACAUUAUUUUAUAUCGUGUACGUUAACACCGAAUUAUUCUUUAU
........................(((((((((...(((((......((((.........))))((((.................))))..))))).)))))))))........ (-12.34 = -12.66 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006