Locus 1063

Sequence ID 3L_DroMel_CAF1
Location 3,114,511 – 3,114,604
Length 93
Max. P 0.525764
window1645

overview

Window 5

Location 3,114,511 – 3,114,604
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 84.51
Mean single sequence MFE -20.40
Consensus MFE -17.59
Energy contribution -17.62
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -1.39
Structure conservation index 0.86
SVM decision value -0.02
SVM RNA-class probability 0.525764
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3114511 93 - 23771897
GUAUC-AGAUUUUAACUCUUUCCUCUUU--------UUCGCACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC
.....-......................--------..........(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -17.70)
>DroSec_CAF1 3497 93 - 1
ACAUC-AGAUUUUAACUCUUUUCUGUUU--------UUCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC
.....-...............((((((.--------....))))))(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -22.30)
>DroSim_CAF1 1650 93 - 1
ACAUC-AGAUUUUAACUCUUUCCUGUUU--------UUCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC
.....-................(((((.--------....))))).(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -21.10)
>DroEre_CAF1 1653 92 - 1
GUAUC-AGGUCUUAA-UCUUCUCUGCUU--------CGCCAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC
.....-.........-.....((((...--------......))))(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -19.10)
>DroYak_CAF1 3539 96 - 1
GUAUC-AGAUCUUAA-UCUUUACUGCUU----CUUCCGCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUUAUGAACGGCCUGGUCAUGGGC
(((..-((((....)-))).)))(((..----.....)))......(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -20.80)
>DroAna_CAF1 1630 100 - 1
UCAUCUAGAUCUUAU--CUAAUCUAUUGUCCACUAUCGUCCACAGACCCUCAACCAGACCUUCCCGGAUCACACAUUCCUGAUGAACGGCCUGGUGAUGGGC
.....(((((.....--...)))))((((..((....))..)))).(((...(((((.(((((..(((........)))....))).)).)))))...))). ( -21.40)
>consensus
GCAUC_AGAUCUUAA_UCUUUUCUGUUU________CGCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC
..............................................(((...(((((.(((((..(((........)))....)))))..)))))...))). (-17.59 = -17.62 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:06 2006