| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,105,820 – 3,105,932 |
| Length | 112 |
| Max. P | 0.871132 |
| Location | 3,105,820 – 3,105,932 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -7.68 |
| Energy contribution | -8.76 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3105820 112 - 23771897 AAAUGGUGAGGAUGUGACUAAUAUCUGAGUAAUAAAGUAUUUCAGCAUUU--------GAUAAAAUGUUAAUGCAAGUGCAUUUAAAAUUGUACAUUUAAUUUAGACAUUAUUGACAUCA ..........(((((.(.((((.(((((((......(((((..(((((((--------....))))))))))))..(((((........))))).....))))))).)))).).))))). ( -27.20) >DroSec_CAF1 38798 120 - 1 AAAUGGUGAGGAUGUGACUUGCAUUUGAGUAAUAAAGUAUUGCAACAUUUCCCGCGAUGAUAAAAUGUUAAUGCAAGUACAUUUAAAAGUGUACAUUUAAUUGAGACAUUAUAGACAUCA ...(((((.(((((((.((((((((...((((((...))))))(((((((............))))))))))))))))))))))...(((((.((......))..))))).....))))) ( -25.90) >DroSim_CAF1 41304 104 - 1 AAAUGGUGAGGAUG---------------UAAUAAAGUAUUGCAACAUUUCCCGCGAUGAUAAAAUGUUAAUGCAAGUACAUUUA-AAGUGUACAUUUAAUAGGGACAUUAUUGACAUCA .(((((((....((---------------(((((...))))))).....(((((((.((((.....)))).)))..((((((...-..))))))........)))))))))))....... ( -24.10) >DroEre_CAF1 43305 119 - 1 AAAGGGUGUAAAUCUGACUAAAGUCUGAGUAAUAAAAUAGGUUAACAUUUUCCAUUAUGCAAAAAUUGUAAUGGAAGUACAUUAA-AAGUGUACAUUUAAUAGUGACAUUAUUGACAUCA ....(((((...((.(((....))).)).......(((((((((.....(((((((((.........)))))))))((((((...-..)))))).........)))).))))).))))). ( -25.60) >DroYak_CAF1 42781 119 - 1 AAAUGGUGUAAAUCGGACUAAAAUCGGAGUAAUACAAUAUUUUAACAUUUCCCAUUAUGAUACCAUUUUAAUGCAAGUACAUUUA-AAGUGCACAUUUAAUAGUGACAUUAUUGACAUCA (((((((((.(((.(((......(..(((((......)))))..)....))).)))...)))))))))(((((...((((.....-..)))).((((....)))).)))))......... ( -17.30) >consensus AAAUGGUGAGGAUGUGACUAAAAUCUGAGUAAUAAAGUAUUUCAACAUUUCCCACGAUGAUAAAAUGUUAAUGCAAGUACAUUUA_AAGUGUACAUUUAAUAGAGACAUUAUUGACAUCA ....((((....................................................................(((((((....)))))))..(((((((.....))))))))))). ( -7.68 = -8.76 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:00 2006