| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,097,411 – 3,097,522 |
| Length | 111 |
| Max. P | 0.525608 |
| Location | 3,097,411 – 3,097,522 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -38.82 |
| Consensus MFE | -13.52 |
| Energy contribution | -15.47 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.35 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3097411 111 - 23771897 UCCCA------UUAGGCUACUCUAUGCCUGCUGCUGUGUGGCCUGGGAGAAGAACGAAAGGUCCAGUAGAGGAUGCCGCUACUGCUGUGGCAUUCUAUUGGCCAUUUUGGCAUUGUU (((((------...((((((.(...((.....)).).)))))))))))......(((((((.((((((((..(((((((.......))))))))))))))))).)))))........ ( -44.10) >DroSec_CAF1 30308 111 - 1 UCCCA------UUAGGCUACUCUAUGCCUGCUGCAGUGCGAGCUGCCAGAAGAACCAAAGGUCCAGUAAAGGAUGCCGCUACUGCUGUGGCAUCCUAUUGGCCAUUUUGGCAUUGUU .....------.(((((........)))))(((((((....)))).))).....(((((((.(((((..((((((((((.......)))))))))))))))))..)))))....... ( -42.40) >DroSim_CAF1 32788 111 - 1 UCCCA------UUAGGCUACUCUAUGCCUGCUGCAGUGCCAGCUACCAGAAGAAUCAAAGGUCGAGUAGAGGAUGCCGCUACUGCUGUGGCAUUCUAUUGGCCAUUUUGGCAUUGUU .....------.(((((........)))))..((((((((((......((....))...((((((....((((((((((.......)))))))))).))))))...)))))))))). ( -43.10) >DroEre_CAF1 34915 111 - 1 UCCCA------UUAGGCUAAUCUAUGCCUGCUGCUGUGCGCGCUGUCCGAAGAACCAAAGGUCCACUAAGGGCAUGCGCUACUGCUGUGGCAUUCUAUUGGCCCUUUUGGCAUUGCU ..(((------..((((((((..(((((.((.((.(((.(((((((((..((.(((...)))...))..))))).))))))).)).)))))))...))))).)))..)))....... ( -40.90) >DroYak_CAF1 34210 111 - 1 UCCCA------UUAGGCUCUUCUAUGCCCUCUGCUGUGCGCGCUGUAAGAACACCCAGAGGUCCAGUAAAGGCAUGCGCUACUGCUGUGGCAUUCUAUUGGCCCUUUUGGCAUUGCU ..(((------..(((((.....((((((((((..(((..(.......)..))).)))))...(((((..(((....)))..))))).)))))......)).)))..)))....... ( -30.90) >DroAna_CAF1 32986 117 - 1 UCCUACUUUCGCCAGGAUAAUCUAUGCCCUUUGCUGUUCUAAAUGCAGGAGUUUCAAUAUGGCCAGCUCGGGAAAGCGCUAUUGCCUGGGUUCCCUCCUCGGCCUCCUCGCUCUGGC ..........(((((...........(((....((((.......))))(((((((.....))..))))))))..((((.....(((.(((......))).))).....))))))))) ( -31.50) >consensus UCCCA______UUAGGCUACUCUAUGCCUGCUGCUGUGCGAGCUGCCAGAAGAACCAAAGGUCCAGUAAAGGAAGCCGCUACUGCUGUGGCAUUCUAUUGGCCAUUUUGGCAUUGUU ............(((((........)))))..((.((((...((......)).......((.((((((..(.....)(((((....)))))....))))))))......)))).)). (-13.52 = -15.47 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:55 2006