Locus 103

Sequence ID 3L_DroMel_CAF1
Location 357,979 – 358,071
Length 92
Max. P 0.509198
window143

overview

Window 3

Location 357,979 – 358,071
Length 92
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 79.36
Mean single sequence MFE -34.15
Consensus MFE -15.35
Energy contribution -14.97
Covariance contribution -0.39
Combinations/Pair 1.29
Mean z-score -2.22
Structure conservation index 0.45
SVM decision value -0.05
SVM RNA-class probability 0.509198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 357979 92 + 23771897
-GGGGCUUGUGGAUACGGAUCUGCUCAACCUUCUGC--GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA---GCAUCUUCGUCAGAAAACUUG----------GCU
-...(((((..((((((((.((((..........))--)).)))).))))..)))))(((((....(((((---.(......)))))).....))----------))) ( -37.60)
>DroPse_CAF1 14602 107 + 1
UA-UGGUUAUGGAUAUGGAUCUCUGCAACCUUCUGGCGGCUUUCGCUAUCUGAGAGCGGCCAUCUCUCAGAGAGGCAUCUUCGUCAGAAAACUUGAGACUUUCAGGCU
..-.((((..(((........)))..))))(((((((((((((((.....))))))).(((.((((...))))))).....))))))))..((((((...)))))).. ( -34.60)
>DroSim_CAF1 12779 92 + 1
-GGGGCUGGUGGAUACGGAUCUGCGCAACCUUCUGC--GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA---GCAUCUUCGUCAGAAAACUUG----------GCU
-...(((.(..((((((((.(((((........)))--)).)))).))))..).)))(((((....(((((---.(......)))))).....))----------))) ( -34.30)
>DroYak_CAF1 13489 92 + 1
-GGUGCUUGUGGAUACGGAUCUGCUCAACCUUCUGC--GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA---GCAUCUUCGUCAGAAAACUUG----------GCU
-...(((((..((((((((.((((..........))--)).)))).))))..)))))(((((....(((((---.(......)))))).....))----------))) ( -37.60)
>DroAna_CAF1 12314 92 + 1
UGGAGC-UGUGGAUAUGGAUCUGCCCAACCUUCUGU--GUUUCCGCUAUCUGCAGGCGGUGAUCUUUCUGA---UCAUCUUCAUAAGAAAACUUU----------GCU
.....(-((..((((((((...((.((......)).--)).)))).))))..)))(((((((((.....))---)))))(((....)))......----------)). ( -26.20)
>DroPer_CAF1 15678 107 + 1
UA-UGGUUAUGGAUAUGGAUCUCUGCAACCUUCUGGCGGCUUUCGCUAUCUGAGAGCGGCCAUCUCUCAGAGAGGCAUCUUCGUCAGAAAACUUGAGACUUUCAGGCU
..-.((((..(((........)))..))))(((((((((((((((.....))))))).(((.((((...))))))).....))))))))..((((((...)))))).. ( -34.60)
>consensus
_GGUGCUUGUGGAUACGGAUCUGCGCAACCUUCUGC__GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA___GCAUCUUCGUCAGAAAACUUG__________GCU
....(((((((((((((((...((..........)).....)))).))))))))))).((..((.....))...))...(((....)))................... (-15.35 = -14.97 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:28 2006