Locus 1027

Sequence ID 3L_DroMel_CAF1
Location 3,032,935 – 3,033,055
Length 120
Max. P 0.831637
window1584

overview

Window 4

Location 3,032,935 – 3,033,055
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.89
Mean single sequence MFE -37.49
Consensus MFE -27.11
Energy contribution -26.78
Covariance contribution -0.33
Combinations/Pair 1.38
Mean z-score -1.66
Structure conservation index 0.72
SVM decision value 0.72
SVM RNA-class probability 0.831637
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3032935 120 + 23771897
CCAUCUACCUGAUCCUCAUACGCGCCGGCAUCAGCCGCCCGCACCUGCUGAGCUUCCUCUACAACAUGAGCUCCGGCACUCACCUGCCGGAGUCGCACGACGACCAUGUGAAGGUGCUGC
.....(((((....(((((..(((.((((....))))..)))...((..(((....)))..))..)))))((((((((......))))))))(((((.(.....).)))))))))).... ( -38.90)
>DroVir_CAF1 7321 120 + 1
AAAUAUUUUUGGUUUUAAUACGCGGCGGCAUUAGCCGUCCGCAUCUGCUCAGCUUUUUAUAUAACAUGAGCACCGGCACUCACCUGCCCGAGAAGAACAAUGAAUAUGUGAAGGUGCUGC
..((((((...(((((.....((((((((....)))).)))).((((((((...............))))).(.((((......)))).)))))))))...))))))............. ( -33.66)
>DroGri_CAF1 13973 120 + 1
AAAUCUAUUUGGUUUUAAUACGCGGCGGCAUCAGUCGACCGCAUCUGUUGAGCUUCCUAUACAAUAUGAGCACGGGCACCCACCUGCCCGAGAAGAACAACGACUAUGUGAAGGUGCUCC
(((((.....)))))......((((((((....)))).)))).......((((..(((.((((.........((((((......))))))((..(.....)..)).)))).))).)))). ( -35.50)
>DroMoj_CAF1 1795 120 + 1
AAAUAUUUUUAGUUUUGAUUCGCGGCGGCAUCAGCCGUCCACACUUGCUCAGCUUUCUCUACAACAUGAGCACGGGCAGUCACCUGCCUGAGAAAAACAACCAGUAUAUAAAGGUGCUGC
...........(((((.....(.((((((....))))))).....((((((...............))))))(((((((....)))))))...)))))...((((((......)))))). ( -35.66)
>DroAna_CAF1 1888 120 + 1
CCAUCUACCUUAUACUUAUACGCGGUGGCAUCAGCCGUCCGCACCUGCUGAGCUUCCUCUACAACAUGAGUUCCGGCACCCACUUGCCGGAGGUAAACAACGAGUACGUGAAGGUGCUGC
.....((((....((((((..((((((((....)))).))))...((..(((....)))..))..))))))(((((((......))))))))))).......(((((......))))).. ( -39.80)
>DroPer_CAF1 12193 120 + 1
CCAUUUAUCUGAUUCUCAUACGCGGCGGCAUCAGUCGCCCCCACCUCCUCAGCUUCCUGUACAACAUGAGCACGGGCACGCACCUGCCCGAGGUGAACAACGAGUAUGUGAAGGUGUUGC
.....(((((...((.(((((.(((((((....))))))..((((((....((((..((.....)).))))..(((((......)))))))))))......).))))).))))))).... ( -41.40)
>consensus
AAAUCUAUCUGAUUCUAAUACGCGGCGGCAUCAGCCGUCCGCACCUGCUCAGCUUCCUCUACAACAUGAGCACCGGCACUCACCUGCCCGAGAAGAACAACGAGUAUGUGAAGGUGCUGC
.....................((((((((....)))).)))).......((((..(((.((((.........((((((......)))))).(.....)........)))).))).)))). (-27.11 = -26.78 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:09 2006