Locus 1014

Sequence ID 3L_DroMel_CAF1
Location 3,009,888 – 3,010,005
Length 117
Max. P 0.598923
window1567

overview

Window 7

Location 3,009,888 – 3,010,005
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.22
Mean single sequence MFE -19.39
Consensus MFE -13.76
Energy contribution -15.08
Covariance contribution 1.31
Combinations/Pair 1.14
Mean z-score -1.56
Structure conservation index 0.71
SVM decision value 0.13
SVM RNA-class probability 0.598923
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3009888 117 - 23771897
AAAAACUUCGCUUAAAUUACUAAAGAAAAACUUAGUAGACCAUUUCAG---CAUGUCAGUUGAUCCACUAUCAAUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU
.....((((((.....(((((((........)))))))...(((((((---..((((.((((((.....)))))).))))...............)))))))..)))))).......... ( -22.03)
>DroSec_CAF1 44140 102 - 1
CAAAACUUCGCUUAAAUUACGAAAGAAAAACUUAGUAGACCAUUUCAG---CAUGUCA---------------AUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU
.....((((((........(....).....(((((.............---..((((.---------------...))))...............)))))....)))))).......... ( -15.71)
>DroSim_CAF1 44716 117 - 1
CAAAACUUCGCUUAAAUUACGAAAGAAAAACGUAGUAGACCAUUUCAG---CAUGUCAAUUGAUCCACUAUCAAUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU
.....((((((....((((((.........)))))).....(((((((---..((((.((((((.....)))))).))))...............)))))))..)))))).......... ( -20.93)
>DroYak_CAF1 44709 120 - 1
AAAAACUUUGCUAAAAUUACUAAAGAAAAACUUAGUAGACUAUUUCAGCAGCAUGUCAGUUGAACCACUAUCUAUCGAUAAUUCAACAAUCCCAUUUGAAAACUGCGAAGAAAACGAGUU
.....((((((.....(((((((........)))))))....(((((((.....))..((((((....((((....)))).)))))).........)))))...)))))).......... ( -18.90)
>consensus
AAAAACUUCGCUUAAAUUACGAAAGAAAAACUUAGUAGACCAUUUCAG___CAUGUCAGUUGAUCCACUAUCAAUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU
.....((((((.....(((((((........)))))))....((((((.....((((.((((((.....)))))).))))...............))))))...)))))).......... (-13.76 = -15.08 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:52 2006