Locus 998

Sequence ID 2R_DroMel_CAF1
Location 4,196,611 – 4,196,709
Length 98
Max. P 0.546149
window1768

overview

Window 8

Location 4,196,611 – 4,196,709
Length 98
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.30
Mean single sequence MFE -28.86
Consensus MFE -11.07
Energy contribution -11.41
Covariance contribution 0.34
Combinations/Pair 1.39
Mean z-score -2.15
Structure conservation index 0.38
SVM decision value 0.02
SVM RNA-class probability 0.546149
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4196611 98 - 20766785
--CGCCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC-----CAGUUGCA-UUUCGGUUUCAGAUACGCAUAAAUA--------UGUA----UCGGGUGCUCUUAC
--(((((.......((((((.........((((((((....))))))))-----.)))))).-...........((((((........--------))))----)))))))....... ( -28.20)
>DroSec_CAF1 8373 97 - 1
--CACCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC------AGUUGCA-UUUCAGUUGCAAAUACGCAUAAAUA--------UGUA----UGGGAUGCUGUUAU
--..((((......((((((...((..((((((((((....))))))))------))..)).-....))))))......((((....)--------))).----)))).......... ( -28.30)
>DroSim_CAF1 17846 97 - 1
--CACCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC------AGUUGCG-UUUCAGUUGCAGAUACGCAUAAAUA--------UGUA----UCGGAUGCUGUUAU
--............((((((((.((..((((((((((....))))))))------))..)).-...........((((((........--------))))----))))).)))))... ( -30.30)
>DroEre_CAF1 10514 103 - 1
--CACCGAAAUGACACAGCUCCAGUUCUUGUA------GAUGCAUCUGC------AGUUGCA-UUUUAGUUGCAGAUUCGCAUAAAUACAUACAUAUGUAUGUGUCGGGUGCUGUUAC
--............(((((.((..........------.((((((((((------(..((..-...))..)))))))..))))..((((((((....))))))))..)).)))))... ( -30.60)
>DroYak_CAF1 9375 99 - 1
--CACCGAAAUGACACAGCUCCAGUUCUUGUAGAUAUAGAUGCAUCUGC------AGUUGCA-UUUCAGUUGCAGAUUCGCAUAAAUA--------UGUA--UUUCGGGUGCUGUUUC
--.........((.(((((.((.......(((.((((..((((((((((------(..((..-...))..)))))))..))))..)))--------).))--)....)).))))).)) ( -29.60)
>DroAna_CAF1 7614 104 - 1
GACACGCAAAUGAUGCAGUUCCA---CUUGUGGAUACAGAUACAGAUACAGAUACGGUUACACUUUCGGAUACAGAUCUGCAUCAA-G--------UGCG--UUCCGCUUGCAGUUUC
((.(((((..((((((.((((((---....)))).))......((((.......(((........))).......)))))))))).-.--------))))--)))............. ( -26.14)
>consensus
__CACCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC______AGUUGCA_UUUCAGUUGCAGAUACGCAUAAAUA________UGUA____UCGGGUGCUGUUAC
..............((((((((.....((((((.......((((.((........)).)))).......))))))....(((..............))).......))).)))))... (-11.07 = -11.41 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:42 2006