Locus 994

Sequence ID 2R_DroMel_CAF1
Location 4,173,689 – 4,173,806
Length 117
Max. P 0.515311
window1762

overview

Window 2

Location 4,173,689 – 4,173,806
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.88
Mean single sequence MFE -46.55
Consensus MFE -31.18
Energy contribution -30.43
Covariance contribution -0.75
Combinations/Pair 1.24
Mean z-score -1.30
Structure conservation index 0.67
SVM decision value -0.04
SVM RNA-class probability 0.515311
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4173689 117 + 20766785
CUCUAUUGGUUUUUCCGGCCAUGAUUUCGUUGGAUCUACGGAGACGUACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUUCCGGUGUGGAAGGAACAGCCGAAGGUGGCACCA---C
......((((...((((.((..(....)(((((...((((....))))...))))).)).))))(((((((.((((...((((((.....))))))..)))).)))))))..))))---. ( -46.80)
>DroPse_CAF1 1039 110 + 1
CUCUGCUGGUCUUCCCGGCCAUGAUCUCCUUGGAUCUGCGGCGGCGCACAGCCGGACGGGCGGACAUUUUCUGCUGCUGCUUUCCCGUGUGGAAGGAGCAGUCCAAAGUG----------
.((((((.((((.....(((..(((((....)))))...)))(((.....))))))).))))))((((((..((((((.((((((.....))))))))))))..))))))---------- ( -48.20)
>DroEre_CAF1 1175 117 + 1
CUCUGCUGGUGUUUCCGGCCAUGAUUUCGCUGGAUCUGCGAAGGCGCACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUCCCGGUGUGGAAGGAACAGCCGAAGGUGGCUCCU---C
(((((((((((..((((((.........))))))..((((....)))).))))))))))).((((((((((.((((.(.(((((......))))).).)))).)))))))..))).---. ( -53.10)
>DroYak_CAF1 1060 117 + 1
CUCUGUUGGUUUUUCCGGCCAUGAUUUCUCUGGAUCUGCGAAGGCGCACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUCCCGGUGUGGAAGGAACAACCAAAAGUGGCUCCU---C
(.((.((((((.((((..((..((((......)))).((....))((((((..(((((((((((.....)))))).)))))...))))))))..)))).)))))).)).)......---. ( -42.50)
>DroAna_CAF1 1209 120 + 1
CAAUCCUGGUUUUCCCGGCUCUCAUUUCCCUGGACCUGCGCCGGCGCACCGCUGGUCGGGCUGACAUCUUCUGCUGCUGUUUCCCGAUCUGGAAGGAGCCGCCCAAGGUGGCUGCCCAGC
...(((.(((....(((((...((..((....))..)).)))))...)))...(((((((..((((.(.......).)))).))))))).))).(((((((((...))))))).)).... ( -43.20)
>DroPer_CAF1 1039 110 + 1
CUCUGCUGGUCUUCCCGGCCAUGAUCUCCUUGGAUCUGCGGCGGCGCACAGCCGGACGGGCGGACAUUUUCUGCUGCUGUUUUCCCGUGUGGAAGGAGCAGUCCAAAGUG----------
.((((((.((((.....(((..(((((....)))))...)))(((.....))))))).))))))((((((..((((((.((((((.....))))))))))))..))))))---------- ( -45.50)
>consensus
CUCUGCUGGUUUUCCCGGCCAUGAUUUCCCUGGAUCUGCGGAGGCGCACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUCCCGGUGUGGAAGGAACAGCCCAAAGUGGCUCC____C
........((((..(((((...((((......))))((((....))))..)))))..))))...((((((..((((.(.(((((......))))).).))))..)))))).......... (-31.18 = -30.43 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:36 2006