| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,166,775 – 4,166,865 |
| Length | 90 |
| Max. P | 0.509270 |
| Location | 4,166,775 – 4,166,865 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 83.39 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -16.10 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4166775 90 + 20766785 UACAUACAUAGGAAGUGCUUAACAAGUUAACUGUAAUUUGACAUGCUGG--GCGUGUUGAAAGCAAAACACGAUAAGG-------------UGUGCACGCCCAGA ........((((.....)))).(((((((....))))))).....((((--((((((..........((((......)-------------))))))))))))). ( -25.30) >DroPse_CAF1 24957 101 + 1 CGCA--GGGAGGAAGUGCUUAACAAGUUAACGGUAAUUCGACAUGCUGG--GCGUGUUGAAAGCAAAACAAGAUAAGGACCGUGGAAAAGAAGUCUACGCCUAGA ...(--((......((.((((.(..(((....((..((((((((((...--)))))))))).))..)))..).)))).))((((((.......)))))))))... ( -24.00) >DroSec_CAF1 32934 90 + 1 UACAUGCAUAGGAAGUGCUUAACAAGUUAACUGUAAUUUGACAUGCUGG--GCGUGUUGAAAGCAAAACACGAUAAGU-------------UGUGCACGCCCAGA .....((((.....))))....(((((((....))))))).....((((--((((((((....)))..(((((....)-------------))))))))))))). ( -27.00) >DroEre_CAF1 31461 92 + 1 UACAUAGAUGGGAAGUGCUUAACAAGUUAACUGUAAUUUGACAUGCUGGGGGCGUGUUGAAAGCAAAACACGAUAAGG-------------UGUGCACGCCCAGA ........((((..((((.............(((..((..((((((.....))))))..)).)))..((((......)-------------))))))).)))).. ( -26.70) >DroYak_CAF1 35250 90 + 1 UACAUGGAUGGGAAGUGCUUAGCAAGUUAACUGUAAUUUGACAUGCUGG--GCGUGUUGAAAGCAAAACACGAUAAGG-------------UGUGCACGCCCAGA ..((((..((((.....)))).(((((((....))))))).))))((((--((((((..........((((......)-------------))))))))))))). ( -28.00) >DroPer_CAF1 28055 101 + 1 CACA--GGGAGGAAGUGCUUAACAAGUUAACGGUAAUUCGACAUGCUGG--GCGUGUUGAAAGCAAAACAAGAUAAGGACCGUGGAAAAGAAGUCUACGCCUAGA ...(--((......((.((((.(..(((....((..((((((((((...--)))))))))).))..)))..).)))).))((((((.......)))))))))... ( -24.00) >consensus UACAU_GAUAGGAAGUGCUUAACAAGUUAACUGUAAUUUGACAUGCUGG__GCGUGUUGAAAGCAAAACACGAUAAGG_____________UGUGCACGCCCAGA .........(((..((((((((....))))......((((((((((.....)))))))))).................................)))).)))... (-16.10 = -15.97 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:35 2006