Locus 990

Sequence ID	2R_DroMel_CAF1
Location	4,159,050 – 4,159,165
Length	115
Max. P	0.817691

overview

Window 8

Location	4,159,050 – 4,159,165
Length	115
Sequences	4
Columns	116
Reading direction	reverse
Mean pairwise identity	74.17
Mean single sequence MFE	-24.64
Consensus MFE	-13.82
Energy contribution	-14.83
Covariance contribution	1.00
Combinations/Pair	1.23
Mean z-score	-1.93
Structure conservation index	0.56
SVM decision value	0.67
SVM RNA-class probability	0.817691
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4159050 115 - 20766785
GCAU-UGCCUACUCGGAGGCGCAUUACUCCCCCAUAAAUAAUGAUAUUCUUAAAUGGUAAUGAAUUCUGUUUCAAUCUAUAUUUCUCAAUUCAGGAUCGUUUAAAGCGAUAAACCA
..((-(((......((((........))))...................(((((((((..((((((..(...............)..))))))..))))))))).)))))...... ( -20.16)
>DroSec_CAF1 25195 115 - 1
GCGC-UGCCUACUCGGAGGCGCAUUACUCCUCCAUAUAUAAAAAUAUUCUUAAAUGAUGGUGGAUUCUGUUCCAACCUAUAUUUCUCAAUUCGAGAUCGUUUAAGGCAAUAAACUU
....-(((((....(((((.(.....).))))).................(((((((.((((((......))).)))......((((.....))))))))))))))))........ ( -29.90)
>DroSim_CAF1 35444 115 - 1
GCGC-UGCCUACUCGGAGGCGCAUUACUCCUUCAUAUAUAAAAAUAUUCUUAAAUGAUGGUGGAUUCUGUUCCAACCUAUAUUUCUCAAUUCGAGAUCGUUUAAGGCAAUAAACUU
((((-(.((.....)).))))).........................((((((((((.((((((......))).)))......((((.....)))))))))))))).......... ( -29.30)
>DroYak_CAF1 27532 90 - 1
GUUUUUGCCUACUUUGAGGCGCCUUACUGCUCCAUAUGUAAAAAUAAUUCUAUAUG--------------------------UUCUCAAUUAGGGAUUGUUGAAGGCGAUGAACUU
((((..((((......))))(((((...((..((((((.((......)).))))))--------------------------.((((.....))))..))..)))))...)))).. ( -19.20)
>consensus
GCGC_UGCCUACUCGGAGGCGCAUUACUCCUCCAUAUAUAAAAAUAUUCUUAAAUGAUGGUGGAUUCUGUUCCAACCUAUAUUUCUCAAUUCGAGAUCGUUUAAGGCAAUAAACUU
.....(((((....(((((.(.....).))))).................(((((((...((((......)))).........((((.....))))))))))))))))........ (-13.82 = -14.83 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:32 2006