Locus 99

Sequence ID 2R_DroMel_CAF1
Location 1,346,884 – 1,346,982
Length 98
Max. P 0.670619
window209

overview

Window 9

Location 1,346,884 – 1,346,982
Length 98
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 91.44
Mean single sequence MFE -33.36
Consensus MFE -28.30
Energy contribution -28.74
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.35
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.670619
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1346884 98 - 20766785
CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU
..(.(((((..((((((((((....))))))))))..((------------------(((.((....)))))))))))).)(((((.(.(((((.....))))).).))))).... ( -34.60)
>DroSec_CAF1 65158 98 - 1
CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU
..(.(((((..((((((((((....))))))))))..((------------------(((.((....)))))))))))).)(((((.(.(((((.....))))).).))))).... ( -34.60)
>DroSim_CAF1 43352 98 - 1
CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUACGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU
..(.(((((..((((((((((....))))))))))....------------------....(((((...)))))))))).)(((((.(.(((((.....))))).).))))).... ( -32.20)
>DroEre_CAF1 46339 115 - 1
CAGUUGUCCGUUGC-CUGGAGCCGGUUUCGGGCCAUUGCCAUGGCCAUUGCUGUUGCCAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU
..(.((((((..((-((((((....))))))))(((.((.(((((.((.((....)).)).))))).))))).)))))).)(((((.(.(((((.....))))).).))))).... ( -37.40)
>DroYak_CAF1 33764 98 - 1
CAGUUGUCCGUUGCCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUGCGUGGUGGGCAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU
((((.(((((..(((........)))..))))).)))).------------------.......((((((((((((.((....)))))))))...(.((....)).)))))).... ( -28.00)
>consensus
CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC__________________CAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU
..(.(((((..((((((((((....))))))))))..........................(((((...)))))))))).)(((((.(.(((((.....))))).).))))).... (-28.30 = -28.74 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:07 2006