Locus 988

Sequence ID 2R_DroMel_CAF1
Location 4,144,950 – 4,145,044
Length 94
Max. P 0.635541
window1755

overview

Window 5

Location 4,144,950 – 4,145,044
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 78.87
Mean single sequence MFE -15.63
Consensus MFE -11.28
Energy contribution -11.40
Covariance contribution 0.12
Combinations/Pair 1.16
Mean z-score -1.48
Structure conservation index 0.72
SVM decision value 0.21
SVM RNA-class probability 0.635541
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4144950 94 + 20766785
GGAUGGAGGUUAAGGUUUGGAGACCAAGCACACACCCAGAAGAAAAAAACUUUUUUAACAUUUUCAAUUUUAUUUUGCUUAUUUUAUCUUUGCU
((((((((((....((((((...))))))....)))..((((((......))))))..........................)))))))..... ( -12.80)
>DroSec_CAF1 10273 77 + 1
UGAUGGGGACUAAGGUUUGGAGACCAACCACACACCCAAAAGAAAAAAACUCUUUUAACAUUUAAAAUUUUAUUUUU-----------------
.(((((((.....((((.(....).)))).....)))((((((.......))))))..))))...............----------------- ( -14.70)
>DroSim_CAF1 11521 77 + 1
GGAUGGGGGUUAAGGCUUGGAGACCAAGCACACACCCAAAAGAAAAAAACUCUUUUAACAUUUAAAAUUUUAUUUUU-----------------
(((((.((((....((((((...))))))....))))((((((.......))))))..)))))..............----------------- ( -19.40)
>consensus
GGAUGGGGGUUAAGGUUUGGAGACCAAGCACACACCCAAAAGAAAAAAACUCUUUUAACAUUUAAAAUUUUAUUUUU_________________
.(((((((......((((((...)))))).....)))((((((.......))))))..))))................................ (-11.28 = -11.40 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:29 2006