Locus 985

Sequence ID 2R_DroMel_CAF1
Location 4,139,009 – 4,139,129
Length 120
Max. P 0.500000
window1750

overview

Window 0

Location 4,139,009 – 4,139,129
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.42
Mean single sequence MFE -44.77
Consensus MFE -36.28
Energy contribution -36.52
Covariance contribution 0.25
Combinations/Pair 1.13
Mean z-score -1.39
Structure conservation index 0.81
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4139009 120 - 20766785
UUUAUCUUCCGACAUUCAACGCCCAGGGCCACUUGCAGGUGGAGCUGGUGGCGGAGCAGGCGAGCCGGCUAAGGCAGUACACGAAUUGGCAGCAAAGCCUGCUGACGGAAGGUCCUCCAA
...((((((((........(((((((..(((((....)))))..)))..)))).(((((((..((..(((((..(.......)..))))).))...)))))))..))))))))....... ( -49.10)
>DroSec_CAF1 4136 120 - 1
UUUAUCUUCCGACAUUCAACGCCCAAGGCCACUUGCAGGUGGAGCUGGUGGCGGAGCAGGCGAGCCGGCUAAGGCAGUACACGAAUUGGCAGCAAAGUCUGCUGACGGAAGAUCCUCCAA
...((((((((........(((((.((.(((((....)))))..)).).)))).(((((((..((..(((((..(.......)..))))).))...)))))))..))))))))....... ( -45.10)
>DroEre_CAF1 4128 120 - 1
UCUAUCUUCCGGCAUUUAACGCCAAUGGCCACAUGCAGAUGGAGCUGGUUGCGGAGCAGGCGAGCCGCCUGAGGGAGUACACGAAUUGGCAGAAAACCCUGCUGACGGAAGAUCCCCCAA
(((((((...(((.......))).(((....)))..)))))))((.....))((..((((((...)))))).((((.....((..(..((((......))))..))).....)))))).. ( -39.50)
>DroYak_CAF1 4030 120 - 1
UUUAUCUUCCGGCAUUCAACGCCAAUGGCCACUUGCAGGUGGAGCUGGUUGCGGAGCAGGCGAGCCGCCUGAGGCAGUACACGGAUUGGCAAAAAAGGCUGCUGGCGGAAGAUCCACCAA
...((((((((........)((((..((((.....(((((((.(((.(((....))).)))...))))))).(.((((......)))).)......))))..)))))))))))....... ( -45.40)
>consensus
UUUAUCUUCCGACAUUCAACGCCAAUGGCCACUUGCAGGUGGAGCUGGUGGCGGAGCAGGCGAGCCGCCUAAGGCAGUACACGAAUUGGCAGAAAAGCCUGCUGACGGAAGAUCCUCCAA
...((((((((...(((..((((.....(((((....))))).(((........))).)))).(((......))).......)))(..((((......))))..)))))))))....... (-36.28 = -36.52 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:24 2006