Locus 982

Sequence ID 2R_DroMel_CAF1
Location 4,135,848 – 4,135,944
Length 96
Max. P 0.893160
window1747

overview

Window 7

Location 4,135,848 – 4,135,944
Length 96
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 92.47
Mean single sequence MFE -14.47
Consensus MFE -13.31
Energy contribution -13.34
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.92
SVM decision value 0.98
SVM RNA-class probability 0.893160
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4135848 96 - 20766785
UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU----AUAUAUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU
....(((((((((((((..............((.((((..((((((((...----.)))))))).)))).))..........)))))))))))))..... ( -16.45)
>DroSec_CAF1 997 92 - 1
UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU--------AUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU
....(((((((((((((..(((((................)))))......--------...........((......))..)))))))))))))..... ( -13.99)
>DroSim_CAF1 661 92 - 1
UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU--------AUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU
....(((((((((((((..(((((................)))))......--------...........((......))..)))))))))))))..... ( -13.99)
>DroEre_CAF1 973 90 - 1
UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUA----------UAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU
....(((((((((((((..(((((................))))).....----------..........((......))..)))))))))))))..... ( -13.99)
>DroYak_CAF1 982 90 - 1
UAGCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUA----------UAUAUCUUACGAGCAAAAUCAGCGUAAAUCAAAAACAAUU
..(.(((((((((((((..(((((................))))).....----------..........((......))..)))))))))))))).... ( -14.19)
>DroAna_CAF1 4705 99 - 1
U-UUUUUUUGGUUUAUGAAACACGAAACAAAUCUUAAGCCUGUGUCUAUAUAUAUAUAUAUAUAUCUUACGAGCAUAAUCAGCGAAAAUCAAAAACAAUC
.-..((((((((((.(((.....((......))....((.((((..(((((((....)))))))...)))).))....)))....))))))))))..... ( -14.20)
>consensus
UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU________AUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU
....(((((((((((((..(((((................))))).........................((......))..)))))))))))))..... (-13.31 = -13.34 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:21 2006