| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,134,980 – 4,135,091 |
| Length | 111 |
| Max. P | 0.648627 |
| Location | 4,134,980 – 4,135,091 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.08 |
| Mean single sequence MFE | -45.48 |
| Consensus MFE | -28.09 |
| Energy contribution | -26.98 |
| Covariance contribution | -1.11 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4134980 111 - 20766785 GGCGGCAGCGGUGGUCCCGAGUUGCCGUGACCGAAUAGCUCAUUUACCGCCAAACGGCCGCCUGGCGACUUGGCAUUCAGUGCUUGCUGCUG---CUGCUGCCGGAAUGCGCCA (((((((((((..((..((((((((((((.(((....((.........))....))).)))..)))))))))((((...))))..))..)))---))))))))((......)). ( -52.10) >DroVir_CAF1 4146 105 - 1 GGUGGCAGCGGCGGUCCUGCAUUACCAUGGCCAAAUAGCUCGUUUACCGCCAAACGUGCGCUCGGUGACUUGGCAUUCUG---------UUGCUGUUGUUGCCGGUAUGCGCCA ((..(((((((((((........)))...(((((...((.(((((......))))).))....(....))))))......---------..))))))))..))(((....))). ( -40.40) >DroGri_CAF1 141 108 - 1 GGUGGCAGCGGCGGUCCUGCAUUACCAUGGCCAAAUAGCUCGUUAACCGCCAAGCGUGCGCUCGGUGACUUGGCAUUCAGCU------GCUGCUGCUGUUGCCUGUAUGCGCCA ((..((((((((((((.((......)).))))...(((((.(((((.((((.(((....))).))))..)))))....))))------)..))))))))..))........... ( -42.90) >DroSec_CAF1 126 114 - 1 GGCGGCAGCGGUGGUCCCGAAUUGCCGUGACCGAAUAGCUCAUUUACCGCCAAACGGCCGCCUGGCGACUUGGCAUUCAGUGCUUGCUGCUGCUGCUGCUGCCGGAAUGCGCCA ((((((((((((((((.((......)).))))...((((.((((....(((((...(((....)))...)))))....))))...))))..))))))))))))((......)). ( -48.60) >DroEre_CAF1 126 108 - 1 GGCGGCAGCGGUGGUCCCGAGUUGCCAUGACCGAAUAGAUCAUUUACCGCCAAACGGCCGCCAGGCGACUUGGCAUUCAGUGCUUGCUGC------UGCUGCCGGAAUGCGCCA (((((((((((..(...(((((((((((((.(.....).)))).....(((....))).....)))))))))((((...)))))..))))------)))))))((......)). ( -49.00) >DroMoj_CAF1 129 99 - 1 GGUGGCAGCGGCGGUCCUGCAUUACCAUGGCCAAACAGCUCAUUUACCGCCAAGCGUGCGUUCGGCGACUUGGCAGUCUG---------UUGCU------GCCGGUAUGCGCCA ...(((((((((((..((((......(((((......)).)))....((((.(((....))).)))).....)))).)))---------)))))------)))(((....))). ( -39.90) >consensus GGCGGCAGCGGCGGUCCCGAAUUACCAUGACCAAAUAGCUCAUUUACCGCCAAACGGCCGCCCGGCGACUUGGCAUUCAGUG______GCUGCU_CUGCUGCCGGAAUGCGCCA ((((.((.((((((((.((......)).))))................(((((.....(((...)))..)))))..........................))))...)))))). (-28.09 = -26.98 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:20 2006