Locus 98

Sequence ID 2R_DroMel_CAF1
Location 1,346,735 – 1,346,844
Length 109
Max. P 0.779108
window208

overview

Window 8

Location 1,346,735 – 1,346,844
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 67.45
Mean single sequence MFE -38.24
Consensus MFE -12.80
Energy contribution -16.16
Covariance contribution 3.36
Combinations/Pair 1.31
Mean z-score -1.98
Structure conservation index 0.33
SVM decision value 0.55
SVM RNA-class probability 0.779108
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1346735 109 - 20766785
CAGUUACAGUAGCGCCAUACCAGUCCGCCCAUACAUGGGGAUUUGAAUUU-GGGCGGUUGGGUGGCGCACGGACCCUU-UGAGGUG---------AAAAACAAAGGGCUAUUGUUGCAUU
..((.(((((((((((((.((((.(((((((..((........))....)-))))))))))))))))).....(((((-((...(.---------...).))))))).)))))).))... ( -47.30)
>DroSec_CAF1 65017 101 - 1
CAGCUACAGUAGCGCCACGCCAGUCCGCCCAUACAUGGCGAUUUGAAUUU-GGGCGGUUGGGCG---UUUGGG------UGCGGUG---------AAAAACAAAGGGCUAUUGUUGCAUU
..((.((((((((.(((((((...(((((((..((........))....)-))))))...))))---)(((..------(......---------..)..))).)))))))))).))... ( -41.20)
>DroSim_CAF1 43211 101 - 1
CAGCUACAGUAGCGCCACACCAGUCCGCCCAUACAUGGGGAUUUGAAUUU-GGGCGGUUGGGCG---UUUGGG------UGCGGUG---------AAAAACAAAGGGCUAUUGUUGCAUU
..((.((((((((.((...((((.(((((((..((........))....)-)))))))))).((---(.....------.)))...---------.........)))))))))).))... ( -38.10)
>DroEre_CAF1 46200 100 - 1
AGGCUACAGUGACGCCUUGCCAGGCCGGGCAUACAUGGGGAUUGGAA------------------UUCACGGAUCCU--UGCGGUGGCGAGGCCCAAAGACAAAAGGGUUCUGUUGCAUU
..((.((((.(((((((((((..(((((.....)..(((((((.(..------------------....).))))))--).))))))))))))((..........))))))))).))... ( -36.00)
>DroYak_CAF1 33604 120 - 1
AAGUUACAGUAACGCUAUGCUAGCACGGGCAUGUAUAGGGAUUUUAAUUUCGGGAAGUUGGGGGCUUCGCAGACCCUUUUGCAGUGGAGAGGCACGAACAACAAAGGGCUUUGUUGCAUU
........(((((.((((((..((....))..)))))).............(.(((((.....))))).)((.((((((((..(((......)))...))..))))))))..)))))... ( -28.60)
>consensus
CAGCUACAGUAGCGCCAUGCCAGUCCGCCCAUACAUGGGGAUUUGAAUUU_GGGCGGUUGGGCG___CACGGA_CCU__UGCGGUG_________AAAAACAAAGGGCUAUUGUUGCAUU
..((.((((((((.((...((((.((((((.....................))))))))))......(((.(.........).)))..................)))))))))).))... (-12.80 = -16.16 +   3.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:06 2006