| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,132,307 – 4,132,400 |
| Length | 93 |
| Max. P | 0.638517 |
| Location | 4,132,307 – 4,132,400 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.20 |
| Mean single sequence MFE | -21.99 |
| Consensus MFE | -11.78 |
| Energy contribution | -11.84 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4132307 93 + 20766785 ------------------------AAC--UG-UCCACUCCAGUCCGCGCGCACCUCGAUCUAUACCAGCAUUUACCUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUCCUGGGCAUUGAA ------------------------...--((-((((.....((....))(((.((((((.....((((((........)))....)))..)))))).))).........))))))..... ( -20.30) >DroGri_CAF1 4494 116 + 1 AUGUC----UAUCUCUAUAUUUCGCACUCUCUGUUUCUGCAGUCUGCACGCACCUCGAUUUAUAGCAGCAUUUACAUUUGCCUGCUGGCCAUUGAGCUGCUCUUUCUGCUGGGAAUCGAA .....----..((((........(((....((((....))))..)))..(((.((((((...((((((((........)).))))))...)))))).)))..........))))...... ( -29.40) >DroEre_CAF1 4122 93 + 1 ------------------------AAC--UU-GCCCCUCCAGUCCGCCCGCACCUCGAUCUAUACCAGCAUUUACCUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUACUUGGCAUUGAA ------------------------...--.(-(((.....(((......(((.((((((.....((((((........)))....)))..)))))).))).......))).))))..... ( -17.42) >DroWil_CAF1 39095 95 + 1 ------------------------AACUCUU-UUUACUUUAGUCCGCCCGAACUUCCAUCUAUAGCAACAUUUAUAUUUGCCUCUUGGCCAUUGAGCUGCUCUUUCUGCUGGGCAUUGAA ------------------------.......-.............((((((.......))...((((............(((....)))....(((...)))....))))))))...... ( -15.10) >DroYak_CAF1 4139 93 + 1 ------------------------AAC--UG-UCCACUCCAGUCCGCCCGCACCUCGAUCUAUACCAGCAUUUACCUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUACUGGGCAUUGAA ------------------------.((--((-.......))))..(((((((.((((((.....((((((........)))....)))..)))))).)))..........))))...... ( -21.20) >DroMoj_CAF1 4532 120 + 1 UUCGCUCACACUCGCUCUACCUCUCUUUCUUUCUUUCUGCAGUCUGCUCGCACCUCGAUCUAUAGCAGCAUUUACAUUUGCCUGCUGGCCAUUGAGCUGCUCUUUCUGCUGGGAAUUGAA ...((........))...........(((.(((((...((((.......(((.((((((...((((((((........)).))))))...)))))).))).....)))).)))))..))) ( -28.50) >consensus ________________________AAC__UU_UCCACUCCAGUCCGCCCGCACCUCGAUCUAUACCAGCAUUUACAUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUGCUGGGCAUUGAA .....................................((((((......(((.((((((........(......)....(((....))).)))))).))).......))))))....... (-11.78 = -11.84 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:17 2006