| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,128,704 – 4,128,815 |
| Length | 111 |
| Max. P | 0.603595 |
| Location | 4,128,704 – 4,128,815 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.24 |
| Mean single sequence MFE | -46.57 |
| Consensus MFE | -29.20 |
| Energy contribution | -29.43 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4128704 111 - 20766785 GGUACGUUGAACAGGCCGGGAUUCCCACUGAUUCCCACCACUCCGGGAAGUGUGGGAAGUCUCGGCGGGGGCGGCGCACCCGCUCCAACCCCGGGCGGAUGGAUCAGUCCA (((.(((((..(..((((((((((((((...(((((........)))))..))))).)))))))))..)..))))).)))(((.((......)))))..((((....)))) ( -54.00) >DroSec_CAF1 499 111 - 1 GGUACGUUGAACAGGCCGGGAUUUCCACUGAUUCCCACCACUCCGGGCAGUGUGGGAAGUCUCGGCGGGGGCGGCGCACCCGCUCCAACUCCUGGCGGAUGGAUCAGUCCA ...........(((((((((((((((((((...(((........)))))))...)))))))))))).(((((((.....))))))).....)))..((((......)))). ( -47.70) >DroEre_CAF1 502 111 - 1 GGUACGUUGAACAGGCCGGGAUUCCCACUGAUUCCCACCACUCCAGGCAGUGUGGGAAGUCGUGGCGGAGGUGGCGCACCCGCUCCAAUCCCUGGCGGAUGGAUCAGUCCG ..............(((((((((.((((...(((((((.(((......))))))))))...)))).((((.(((.....))))))))))))).)))((((......)))). ( -44.30) >DroWil_CAF1 34537 102 - 1 GCCACAUUAAAUAGCCCACCAUUACCAUUAAUGCCCACCACACCGGACAAUGUGGGCAAACGUGGCGGCGGUGGUGCAU---------UAUUCGGUGGAUGUAUCAAACCA .((((........(((((((.(..((((...(((((((.............)))))))...))))..).))))).))..---------......))))............. ( -34.41) >DroYak_CAF1 522 111 - 1 GGUACGUUGAACAGGCCGGGAUUCCCACUGAUUCCCACCACACCGGGCAGUGUGGGAAGUCGCGGUGGAGGCGGCGCACCCGCUCCAACCCCUGGGGGAUGGAUCAGUCCA (((.(((((.....((((.(((((((((.....(((........)))....))))).)))).)))).....))))).))).(.((((.(((....))).)))).)...... ( -45.50) >DroAna_CAF1 480 111 - 1 GGGACGUUAAACAGUCCCCCGUUGCCACUAAUGCCCACCACGCCGGGCAGAGUGGGCAAUCGGGGUGGAGGUGGUGCAGCUCCUGGCGAGCCAGGUGGGUGGAUCAGCCCA (((((........)))))(((((((((((..(((((........))))).))).))))).)))..(((.(.((((.((.(((((((....))))).)).)).)))).)))) ( -53.50) >consensus GGUACGUUGAACAGGCCGGGAUUCCCACUGAUUCCCACCACUCCGGGCAGUGUGGGAAGUCGCGGCGGAGGCGGCGCACCCGCUCCAACCCCUGGCGGAUGGAUCAGUCCA (((.(((((.....((((((((((((((.....(((........)))....))))).))))))))).....))))).)))................((((......)))). (-29.20 = -29.43 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:16 2006