Locus 974

Sequence ID 2R_DroMel_CAF1
Location 4,119,059 – 4,119,174
Length 115
Max. P 0.594089
window1734

overview

Window 4

Location 4,119,059 – 4,119,174
Length 115
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.11
Mean single sequence MFE -27.33
Consensus MFE -16.41
Energy contribution -17.63
Covariance contribution 1.23
Combinations/Pair 1.07
Mean z-score -1.96
Structure conservation index 0.60
SVM decision value 0.12
SVM RNA-class probability 0.594089
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4119059 115 + 20766785
--AAUUUUAAAUGGUUUUGUAUUAUUUUCUACCCAUAUCA---GUGGCUAAUUACUCAAAGAUACAUUUCGAAUUGGUUUUAUUUUGAGAAAUUAGCCUGGUGGGGUAUAUCACGCUUCG
--......(((((((.....)))))))..(((((.(((((---..((((((((.(((((((...((........))......))))))).))))))))))))))))))............ ( -27.10)
>DroSim_CAF1 32094 115 + 1
--AAUGG---AAAGUUUUAUAUUACUUUCUACCCAUAUCAGCAGUGGCUAAUUACUCAAAGACACAUUUCGAAUUUGUUUUAAUCUGAGGCAUUAGCCUGGUGGGGUAUAUUACGCUUCG
--...((---(((((........)))))))((((.(((((.....(((((((..((((((((((.((.....)).))))))....))))..))))))))))))))))............. ( -29.40)
>DroYak_CAF1 16102 110 + 1
CGAAUGG---AAAGAUUC--UUUACGUUCUACCCAUAUCA---GUGACUAAUUACUCAAAGACACAUUUUGAGUUUGUUUUAAUCUGAUA-AUUACCCU-GUGGGGUAUUUUACGCUUGG
.(((((.---((((...)--))).)))))...((((((((---(.....(((.((((((((.....))))))))..))).....))))))-..(((((.-...))))).........))) ( -25.50)
>consensus
__AAUGG___AAAGUUUU_UAUUACUUUCUACCCAUAUCA___GUGGCUAAUUACUCAAAGACACAUUUCGAAUUUGUUUUAAUCUGAGA_AUUAGCCUGGUGGGGUAUAUUACGCUUCG
.............................(((((.(((((.....(((((((..((((((((((.((.....)).))))))....))))..)))))))))))))))))............ (-16.41 = -17.63 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:09 2006